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Os03g0197000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0327) R2 : 0.913
β1 : -1.45 (0.119) R2dD : 0.0292 R2D : 0.0206
β2 : 5.72 (0.0838) R2dC : 0.893 R2C : 0.88
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.414 (0.0696) R2dN8 : 0.00904 R2N8 : -0.00683
σ : 0.613
deviance : 171.5
__
_____
C
peak time of C : 7.54
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.2 0.519 11.5 -1.46 3.27 2.54 -0.0325 1.96 -0.404 6.01 0.0003798 280 1.85 9.87
135.86 0.543 11.5 -1.43 3.26 2.52 1.34 -- -0.395 6.12 0.1024 276 1.75 9.98
121.88 0.514 11.5 -1.46 3.24 2.56 -- 1.96 -0.403 6.02 0.1412 282 1.77 9.97
141.73 0.554 11.5 -1.44 3.25 2.51 -- -- -0.396 6.05 0.2154 276 1.73 10
207.9 0.672 11.6 -1.45 -- 4.58 -- 1.83 -0.435 -- 1.812 289 0.233 10.5
155.77 0.585 11.4 -1.51 5.71 -- 2.38 -- -0.41 7.57 -- -- -- --
171.5 0.613 11.4 -1.45 5.72 -- -- -- -0.414 7.54 -- -- -- --
223.71 0.697 11.6 -1.48 -- 4.57 -- -- -0.44 -- 2.225 297 0.128 10.5
196.49 0.653 11.5 -- 3.24 2.55 -- -- -0.242 6.03 0.3396 280 1.79 9.95
1922.01 2.05 11.6 -1.37 -- -- -- -- -0.326 -- -- -- -- --
226.9 0.705 11.4 -- 5.71 -- -- -- -0.253 7.55 -- -- -- --
279.37 0.778 11.5 -- -- 4.59 -- -- -0.281 -- 2.877 309 0.00444 10.6
1971.19 2.07 11.5 -- -- -- -- -- -0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.35 precipitation 0.1 270 < th dose independent rect. 2 10
2 123.35 precipitation 0.1 270 < th dose dependent rect. 2 10
5 124.32 temperature 20.0 270 > th dose independent rect. 12 14
10 126.10 temperature 10.0 270 > th dose independent rect. 2 10
11 126.10 atmosphere 995.0 270 > th dose independent rect. 2 10
12 126.10 atmosphere 1015.0 270 < th dose independent rect. 2 10
13 126.10 temperature 10.0 270 > th dose independent rect. 12 14
14 126.35 wind 9.0 270 < th dose independent rect. 12 14
16 126.62 wind 9.0 270 < th dose independent rect. 2 10
27 127.01 atmosphere 1015.0 270 < th dose independent rect. 22 18
32 127.22 precipitation 0.1 270 < th dose independent rect. 16 19
33 127.22 precipitation 0.1 270 < th dose dependent rect. 16 19
36 127.70 wind 9.0 270 < th dose independent rect. 11 5
37 127.86 wind 9.0 270 < th dose independent rect. 22 18
39 127.97 wind 7.0 270 < th dose independent rect. 16 6
41 128.02 wind 9.0 270 < th dose independent rect. 16 19
42 128.15 wind 1.0 270 > th dose independent rect. 11 5
43 128.23 temperature 10.0 270 > th dose independent rect. 11 5
44 128.23 atmosphere 1015.0 270 < th dose independent rect. 11 5
45 128.23 radiation 30.0 270 < th dose independent rect. 16 6
46 128.23 temperature 10.0 270 > th dose independent rect. 16 19
47 128.32 temperature 10.0 270 > th dose independent rect. 16 6
49 128.32 temperature 10.0 270 > th dose independent rect. 22 18
50 128.36 precipitation 0.1 270 < th dose independent rect. 11 5
51 128.36 precipitation 0.1 270 < th dose dependent rect. 11 5
52 128.37 precipitation 0.1 270 < th dose independent rect. 16 6
53 128.37 precipitation 0.1 270 < th dose dependent rect. 16 6
54 128.41 humidity 50.0 270 > th dose independent rect. 2 10
57 128.74 atmosphere 995.0 270 > th dose independent rect. 11 5
58 128.77 temperature 20.0 10 > th dose independent rect. 14 14
60 128.80 precipitation 0.1 270 < th dose independent rect. 15 21
61 128.80 precipitation 0.1 270 < th dose dependent rect. 15 21
62 128.81 humidity 50.0 270 > th dose independent rect. 22 18
64 128.83 wind 1.0 270 > th dose independent rect. 16 6
65 128.88 atmosphere 995.0 270 > th dose independent rect. 22 18
66 128.96 precipitation 0.1 270 < th dose independent rect. 12 14
67 128.96 precipitation 0.1 270 < th dose dependent rect. 12 14
75 129.41 humidity 50.0 270 > th dose independent rect. 11 5
76 129.41 atmosphere 995.0 270 > th dose independent rect. 16 19
77 129.42 atmosphere 995.0 270 > th dose independent rect. 16 6
81 129.54 wind 9.0 270 < th dose independent rect. 12 3
84 129.74 precipitation 0.1 270 < th dose independent rect. 22 18
85 129.74 precipitation 0.1 270 < th dose dependent rect. 22 18
87 129.85 radiation 40.0 270 < th dose dependent rect. 16 6
90 129.89 wind 1.0 270 > th dose independent rect. 12 3
91 129.92 radiation 40.0 270 < th dose independent rect. 16 19
92 129.98 temperature 10.0 270 > th dose independent rect. 12 3
94 129.98 atmosphere 1015.0 270 < th dose independent rect. 12 3
95 129.98 temperature 10.0 270 > th dose independent rect. 15 21
100 130.02 wind 9.0 270 < th dose independent rect. 15 21
102 130.11 precipitation 0.1 270 < th dose independent rect. 12 3
103 130.11 precipitation 0.1 270 < th dose dependent rect. 12 3
107 130.19 atmosphere 995.0 270 > th dose independent rect. 12 3
114 130.45 atmosphere 1015.0 270 < th dose independent rect. 21 20
116 130.52 temperature 10.0 90 > th dose dependent rect. 3 10
144 130.95 wind 7.0 270 < th dose independent rect. 17 4
173 131.19 wind 9.0 270 < th dose dependent rect. 16 6
177 131.23 humidity 50.0 270 > th dose independent rect. 12 3
191 131.37 humidity 50.0 270 > th dose independent rect. 16 19
201 131.49 humidity 90.0 270 < th dose independent rect. 11 5
210 131.62 precipitation 0.1 270 < th dose independent rect. 17 4
211 131.62 humidity 50.0 270 > th dose independent rect. 16 6
213 131.62 precipitation 0.1 270 < th dose dependent rect. 17 4
219 131.68 temperature 10.0 270 > th dose independent rect. 17 4
220 131.68 radiation 20.0 270 < th dose independent rect. 17 4
223 131.68 temperature 10.0 270 > th dose independent rect. 21 20
235 131.88 wind 1.0 270 > th dose independent rect. 17 4
236 131.88 wind 1.0 270 > th dose independent rect. 16 19
244 132.02 atmosphere 995.0 270 > th dose independent rect. 15 21
246 132.03 radiation 40.0 270 < th dose dependent rect. 17 4
260 132.20 atmosphere 995.0 270 > th dose independent rect. 12 14
262 132.22 atmosphere 1015.0 270 < th dose independent rect. 16 6
266 132.27 humidity 50.0 90 > th dose dependent rect. 13 4
267 132.28 atmosphere 1015.0 90 < th dose independent rect. 13 14
270 132.33 humidity 90.0 270 < th dose independent rect. 12 3
284 132.43 humidity 50.0 270 > th dose independent rect. 17 4
288 132.47 radiation 40.0 270 < th dose dependent rect. 16 19
299 132.57 radiation 40.0 270 < th dose dependent rect. 21 11
319 132.63 radiation 40.0 10 < th dose independent rect. 13 5
325 132.64 atmosphere 1015.0 10 < th dose independent rect. 24 18
335 132.69 precipitation 0.1 10 < th dose independent rect. 18 19
336 132.69 precipitation 0.1 10 < th dose dependent rect. 18 19
340 132.73 wind 9.0 10 < th dose independent rect. 24 18
350 132.80 radiation 40.0 90 < th dose independent rect. 13 14
354 132.83 wind 9.0 10 < th dose independent rect. 18 6
355 132.83 humidity 50.0 720 > th dose dependent rect. 20 5
356 132.84 radiation 10.0 10 < th dose dependent rect. 18 6
360 132.85 temperature 10.0 10 > th dose independent rect. 18 6
361 132.85 humidity 50.0 10 > th dose independent rect. 18 6
362 132.85 radiation 20.0 10 < th dose independent rect. 18 6
365 132.85 temperature 10.0 10 > th dose independent rect. 24 18
367 132.87 radiation 1.0 270 > th dose independent rect. 11 5
368 132.87 atmosphere 995.0 10 > th dose independent rect. 18 6
370 132.88 wind 1.0 10 > th dose independent rect. 18 6
391 132.94 temperature 10.0 270 > th dose independent rect. 21 11
392 132.94 temperature 30.0 270 < th dose independent rect. 21 11
393 132.94 humidity 50.0 270 > th dose independent rect. 21 11
395 132.94 atmosphere 995.0 270 > th dose independent rect. 21 11
396 132.94 temperature 10.0 270 > th dose independent rect. 8 13
409 133.01 radiation 40.0 270 < th dose independent rect. 21 11
411 133.04 wind 9.0 270 < th dose independent rect. 21 11
413 133.06 precipitation 0.1 10 < th dose independent rect. 18 6
414 133.06 precipitation 0.1 10 < th dose dependent rect. 18 6
425 133.13 temperature 20.0 270 > th dose independent rect. 22 4
431 133.18 wind 9.0 270 < th dose dependent rect. 12 3
462 133.33 radiation 10.0 43200 < th dose dependent rect. 19 6
463 133.35 wind 9.0 10 < th dose independent rect. 13 5
476 133.44 atmosphere 1015.0 270 < th dose independent rect. 17 4
485 133.55 wind 9.0 10 < th dose independent rect. 18 19
486 133.55 wind 9.0 270 < th dose dependent rect. 11 5
493 133.59 temperature 30.0 270 < th dose independent rect. 12 3
502 133.61 humidity 50.0 10 > th dose independent rect. 18 19
507 133.63 atmosphere 1015.0 90 < th dose dependent rect. 13 4
516 133.66 atmosphere 1015.0 270 < th dose dependent rect. 13 2
519 133.68 radiation 1.0 270 > th dose independent rect. 12 3
528 133.71 atmosphere 995.0 270 > th dose dependent rect. 12 3
530 133.72 wind 1.0 10 > th dose independent rect. 13 5
539 133.73 atmosphere 995.0 10 > th dose independent rect. 24 18
553 133.77 temperature 10.0 10 > th dose dependent rect. 4 10
554 133.78 temperature 10.0 10 > th dose independent rect. 13 5
556 133.78 atmosphere 1010.0 10 < th dose independent rect. 13 5
559 133.78 temperature 10.0 10 > th dose independent rect. 18 19
560 133.80 atmosphere 995.0 10 > th dose independent rect. 18 19
566 133.82 atmosphere 1015.0 270 < th dose dependent rect. 11 5
571 133.88 precipitation 0.1 10 < th dose independent rect. 13 5
572 133.88 precipitation 0.1 10 < th dose dependent rect. 13 5
574 133.89 wind 9.0 270 < th dose independent rect. 8 13
592 133.95 precipitation 0.1 270 < th dose independent rect. 8 13
594 133.95 precipitation 0.1 270 < th dose dependent rect. 8 13
598 133.98 temperature 30.0 10 < th dose independent rect. 12 6
599 133.98 radiation 40.0 10 < th dose independent rect. 13 15
615 134.05 atmosphere 995.0 270 > th dose dependent rect. 16 6
636 134.12 precipitation 0.1 10 < th dose independent rect. 4 10
639 134.12 precipitation 0.1 10 < th dose dependent rect. 4 10
641 134.13 precipitation 0.1 10 < th dose independent rect. 24 18
642 134.13 precipitation 0.1 10 < th dose dependent rect. 24 18
707 134.34 temperature 20.0 270 > th dose independent rect. 21 6
708 134.34 temperature 30.0 10 < th dose independent rect. 18 6
731 134.43 temperature 10.0 270 > th dose dependent rect. 11 5
769 134.61 temperature 10.0 270 > th dose dependent rect. 12 3
774 134.64 atmosphere 1015.0 270 < th dose independent rect. 8 13
778 134.65 atmosphere 995.0 10 > th dose independent rect. 13 5
781 134.65 temperature 10.0 10 > th dose independent rect. 4 10
783 134.65 atmosphere 995.0 10 > th dose independent rect. 4 10
784 134.65 atmosphere 1015.0 10 < th dose independent rect. 4 10
786 134.65 temperature 10.0 10 > th dose independent rect. 14 14
789 134.67 humidity 50.0 10 > th dose independent rect. 14 4
801 134.69 atmosphere 995.0 270 > th dose dependent rect. 11 5
809 134.72 wind 1.0 90 > th dose independent rect. 24 17
816 134.78 temperature 30.0 270 < th dose independent rect. 11 5
817 134.78 humidity 50.0 10 > th dose independent rect. 24 18
830 134.86 wind 1.0 270 > th dose independent rect. 12 14
834 134.87 humidity 50.0 10 > th dose dependent rect. 13 5
870 135.01 radiation 40.0 270 < th dose independent rect. 2 10
880 135.04 wind 9.0 10 < th dose independent rect. 14 14
888 135.05 wind 1.0 90 > th dose dependent rect. 13 4
892 135.06 humidity 90.0 10 < th dose independent rect. 14 4
933 135.15 wind 1.0 270 > th dose independent rect. 16 12
943 135.18 temperature 10.0 90 > th dose dependent rect. 13 14
950 135.20 humidity 60.0 720 > th dose dependent rect. 21 2
971 135.28 temperature 10.0 1440 > th dose independent rect. 14 5
977 135.28 temperature 10.0 1440 > th dose independent rect. 19 19
980 135.28 atmosphere 995.0 1440 > th dose independent rect. 19 19
998 135.32 radiation 1.0 270 < th dose independent rect. 21 19