BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0187400 Os03g0187400|AK100103
         (200 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0187400  Zinc finger, FYVE/PHD-type domain containing p...   189   8e-49
Os04g0450000  Zinc finger, FYVE/PHD-type domain containing p...    75   3e-14

>Os03g0187400 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 200

 Score =  189 bits (481), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 112/200 (56%)

Query: 1   MGIDKXXXXXXXXXXXXXXXXXXXVCCMCGDRGLLPELFRCAACAVRSQHTYCSERYPKA 60
           MGIDK                   VCCMCGDRGLLPELFRCAACAVRSQHTYCSERYPKA
Sbjct: 1   MGIDKSAAGSSSSPPRPVAAATAAVCCMCGDRGLLPELFRCAACAVRSQHTYCSERYPKA 60

Query: 61  ESYGTCNWCLRADQXXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXXXXXXXTAAAKVVAA 120
           ESYGTCNWCLRADQ               M                     TAAAKVVAA
Sbjct: 61  ESYGTCNWCLRADQGSDGGGGGAAAASSSMARPPTGARAAAGGDPAASSRSTAAAKVVAA 120

Query: 121 RGHFAADXXXXXXXXXXXXXXXXXXXXXQRRILLRRSASDLGGRVRRADHDAPPPLSXXX 180
           RGHFAAD                     QRRILLRRSASDLGGRVRRADHDAPPPLS   
Sbjct: 121 RGHFAADLSKPIKKPPPAPAPLPPPSPAQRRILLRRSASDLGGRVRRADHDAPPPLSPGV 180

Query: 181 XXXXXXXXXYKLLEEVITTS 200
                    YKLLEEVITTS
Sbjct: 181 ARGRPRVRRYKLLEEVITTS 200



>Os04g0450000 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 211

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 35/46 (76%)

Query: 25 VCCMCGDRGLLPELFRCAACAVRSQHTYCSERYPKAESYGTCNWCL 70
          VCCMCGDRGL  ELFRC  C VR QH YCS+ YP+A +Y  CNWCL
Sbjct: 22 VCCMCGDRGLPEELFRCRLCRVRLQHRYCSDLYPRATAYRRCNWCL 67



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.135    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,017,065
Number of extensions: 97717
Number of successful extensions: 286
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)