Os04g0450000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os04g0450000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 349.79 | 0.879 | 6.25 | 3.88 | 1.61 | -1.36 | 0.626 | -0.334 | 1.04 | 8.97 | 1010 | 23089 | -- | -- |
| 350.12 | 0.871 | 6.25 | 3.8 | 1.61 | -1.35 | 0.678 | -- | 1.04 | 8.95 | 1010 | 23088 | -- | -- |
| 351.08 | 0.873 | 6.25 | 3.91 | 1.6 | -1.36 | -- | -0.345 | 1.04 | 9.05 | 1010 | 23109 | -- | -- |
| 351.37 | 0.873 | 6.26 | 3.79 | 1.6 | -1.35 | -- | -- | 1.02 | 9.04 | 1010 | 23109 | -- | -- |
| 498.75 | 1.04 | 6.29 | 3.9 | -- | -1.35 | -- | -0.31 | 1.05 | -- | 1010 | 23109 | -- | -- |
| 412.5 | 0.952 | 6.2 | 4.38 | 1.61 | -- | 0.619 | -- | 1.29 | 8.88 | -- | -- | -- | -- |
| 413.74 | 0.953 | 6.2 | 4.41 | 1.6 | -- | -- | -- | 1.29 | 8.95 | -- | -- | -- | -- |
| 498.97 | 1.04 | 6.3 | 3.8 | -- | -1.35 | -- | -- | 1.03 | -- | 1010 | 23088 | -- | -- |
| 445.5 | 0.983 | 6.51 | -- | 1.71 | -3.43 | -- | -- | -0.0341 | 8.72 | 1016 | 47520 | -- | -- |
| 560.76 | 1.11 | 6.24 | 4.41 | -- | -- | -- | -- | 1.3 | -- | -- | -- | -- | -- |
| 925.56 | 1.42 | 6.31 | -- | 1.61 | -- | -- | -- | 0.8 | 8.74 | -- | -- | -- | -- |
| 593.9 | 1.14 | 6.54 | -- | -- | -3.46 | -- | -- | -0.0196 | -- | 1016 | 47520 | -- | -- |
| 1072.75 | 1.53 | 6.35 | -- | -- | -- | -- | -- | 0.812 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 345.42 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 2 | 346.67 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 4 | 346.94 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 10 | 347.44 | wind | 1.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 13 | 347.62 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 16 | 347.88 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 22 | 348.19 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 36 | 348.63 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 64 | 349.35 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 85 | 349.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 92 | 349.80 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 93 | 349.81 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 115 | 350.11 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 189 | 350.63 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 256 | 350.96 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 333 | 351.26 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 336 | 351.26 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 484 | 351.64 | atmosphere | 1010.0 | 14400 | < th | dose independent | no | NA | NA |
| 513 | 351.71 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 576 | 351.89 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 580 | 351.90 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 668 | 352.08 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 671 | 352.09 | atmosphere | 1005.0 | 14400 | > th | dose dependent | no | NA | NA |
| 673 | 352.09 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 857 | 352.39 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 958 | 352.58 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 993 | 352.66 | atmosphere | 1010.0 | 14400 | > th | dose independent | no | NA | NA |