BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0187300 Os03g0187300|AK106710
(384 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0187300 Quinonprotein alcohol dehydrogenase-like domai... 768 0.0
Os03g0286800 Similar to WD and tetratricopeptide repeats pr... 99 7e-21
Os10g0544500 WD40-like domain containing protein 95 1e-19
Os06g0724500 WD40-like domain containing protein 83 4e-16
>Os03g0187300 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 384
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/384 (96%), Positives = 369/384 (96%)
Query: 1 MQVATKSLEMGTNLMLGVEACSTILLAVDHNIDDNMKHDCLCTRAGLYLKRRWKNDVYMA 60
MQVATKSLEMGTNLMLGVEACSTILLAVDHNIDDNMKHDCLCTRAGLYLKRRWKNDVYMA
Sbjct: 1 MQVATKSLEMGTNLMLGVEACSTILLAVDHNIDDNMKHDCLCTRAGLYLKRRWKNDVYMA 60
Query: 61 IRDCNSARCIDSRSFQAHLYMAEALLQLGRLKEASEYVDALNTIVPPYSQSVKQVENIKE 120
IRDCNSARCIDSRSFQAHLYMAEALLQLGRLKEASEYVDALNTIVPPYSQSVKQVENIKE
Sbjct: 61 IRDCNSARCIDSRSFQAHLYMAEALLQLGRLKEASEYVDALNTIVPPYSQSVKQVENIKE 120
Query: 121 QLFAAELEKNKKDQVGNTYTDARHGXXXXXXXXXXXXXXXGSSSQEGREDSDYDDEMELD 180
QLFAAELEKNKKDQVGNTYTDARHG GSSSQEGREDSDYDDEMELD
Sbjct: 121 QLFAAELEKNKKDQVGNTYTDARHGRLRSLSDLLFRSDASGSSSQEGREDSDYDDEMELD 180
Query: 181 FETSASGDESRDSDPGFVRGSLSLRFHRRDSQTDEHSGENGSAESTQNGDSAYQPEVAVD 240
FETSASGDESRDSDPGFVRGSLSLRFHRRDSQTDEHSGENGSAESTQNGDSAYQPEVAVD
Sbjct: 181 FETSASGDESRDSDPGFVRGSLSLRFHRRDSQTDEHSGENGSAESTQNGDSAYQPEVAVD 240
Query: 241 MKQRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNC 300
MKQRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNC
Sbjct: 241 MKQRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNC 300
Query: 301 IQSHPYDCAVATSGIDNTIKLWTPDANATSMIAGPEIDVSSVIENNQRKLSRNREILLPF 360
IQSHPYDCAVATSGIDNTIKLWTPDANATSMIAGPEIDVSSVIENNQRKLSRNREILLPF
Sbjct: 301 IQSHPYDCAVATSGIDNTIKLWTPDANATSMIAGPEIDVSSVIENNQRKLSRNREILLPF 360
Query: 361 EFLERFRMHEFGEGSLHPLECAQS 384
EFLERFRMHEFGEGSLHPLECAQS
Sbjct: 361 EFLERFRMHEFGEGSLHPLECAQS 384
>Os03g0286800 Similar to WD and tetratricopeptide repeats protein 1
Length = 477
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 4/110 (3%)
Query: 239 VDMKQRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVV 298
++ Q Y H N T +K SF G E++ SGSD G F+W K+ G L++M+ GD +VV
Sbjct: 299 LEQPQAYTGHRNFRT-VKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVV 357
Query: 299 NCIQSHPYDCAVATSGIDNTIKLWTPDANATSMIAGPEIDVSSVIENNQR 348
NCI+ HP+ +ATSGID T+K+WTP AN +++ P+ + +I +N+R
Sbjct: 358 NCIEPHPHFPFLATSGIDKTVKIWTPSAN--KVMSLPK-NAKQIIASNKR 404
>Os10g0544500 WD40-like domain containing protein
Length = 499
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 11/125 (8%)
Query: 245 YVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNCIQSH 304
Y H N T +K +F+G E++ASGSD GR FIW K+ G+ ++ + GD VVNCI+ H
Sbjct: 320 YAGHRNCET-VKGVTFIGPNHEYVASGSDCGRLFIWRKKDGKFLRAMEGDECVVNCIEPH 378
Query: 305 PYDCAVATSGIDNTIKLWTPDANATSMIAGPEIDVSSVIENNQRKLSRNREILLPFEFLE 364
P+ +A+SGIDN +K+WTP A + + V+ + K + R L F E
Sbjct: 379 PHTMTIASSGIDNDVKIWTPSAT----------ERAPVVNIEELKPRKRRTKLWHFSLPE 428
Query: 365 RFRMH 369
H
Sbjct: 429 ELIFH 433
>Os06g0724500 WD40-like domain containing protein
Length = 480
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 243 QRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNCIQ 302
Q + H N T +K +FLG +++ +GSD GR FIW K+ G L++++ GD +VNC++
Sbjct: 316 QIFKGHRNKHT-MKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELMRVMKGDKQIVNCVE 374
Query: 303 SHPYDCAVATSGIDNTIKLWTP 324
HPY +A GID IK+W P
Sbjct: 375 QHPYGIVIANCGIDKDIKIWAP 396
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,537,099
Number of extensions: 507050
Number of successful extensions: 2026
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2027
Number of HSP's successfully gapped: 4
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)