BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0184000 Os03g0184000|AF049356
(557 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0184000 Similar to Phytoene desaturase (Fragment) 1156 0.0
Os07g0204900 Similar to Zeta-carotene desaturase (Fragment) 241 1e-63
>Os03g0184000 Similar to Phytoene desaturase (Fragment)
Length = 557
Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/557 (100%), Positives = 557/557 (100%)
Query: 1 GQLPTHRCFASSSIQALKSSQHVSFGVKSLVLRNKGKRFRRRLGALQVVCQDFPRPPLEN 60
GQLPTHRCFASSSIQALKSSQHVSFGVKSLVLRNKGKRFRRRLGALQVVCQDFPRPPLEN
Sbjct: 1 GQLPTHRCFASSSIQALKSSQHVSFGVKSLVLRNKGKRFRRRLGALQVVCQDFPRPPLEN 60
Query: 61 TINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 120
TINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG
Sbjct: 61 TINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 120
Query: 121 KIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSR 180
KIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSR
Sbjct: 121 KIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSR 180
Query: 181 FDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMK 240
FDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMK
Sbjct: 181 FDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMK 240
Query: 241 KQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERL 300
KQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERL
Sbjct: 241 KQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERL 300
Query: 301 CMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLL 360
CMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLL
Sbjct: 301 CMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLL 360
Query: 361 VPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKE 420
VPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKE
Sbjct: 361 VPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKE 420
Query: 421 YYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKT 480
YYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKT
Sbjct: 421 YYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKT 480
Query: 481 PRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKM 540
PRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKM
Sbjct: 481 PRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKM 540
Query: 541 LSRRSLKSLQSEVPVAS 557
LSRRSLKSLQSEVPVAS
Sbjct: 541 LSRRSLKSLQSEVPVAS 557
>Os07g0204900 Similar to Zeta-carotene desaturase (Fragment)
Length = 578
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 254/481 (52%), Gaps = 37/481 (7%)
Query: 84 LQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGA 143
L+V I GAGLAG+STA L D GH+ L E+R +GGK+ ++ D G+ E GLH+FFG
Sbjct: 73 LKVAIIGAGLAGMSTAVELLDQGHEVDLYESRPFIGGKVGSFVDRKGNHIEMGLHVFFGC 132
Query: 144 YPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEM 203
Y N+ L ++G ++ L KEH+ F NK G DF + APL+GI A LR N++
Sbjct: 133 YSNLFRLMKKVGADNNLLVKEHTHTFV--NKGGTIGELDFRFPVGAPLHGIQAFLRTNQL 190
Query: 204 LTWPE-KVKFALGLLP---AMV---GGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAM 256
+ + + AL L P A+V G V D + S+W +G ++ +
Sbjct: 191 KVYDKARNAVALALSPVVRALVDPDGALQQVRDLDDVSFSDWFLSKGGTRESITRMWDPV 250
Query: 257 SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVR 316
+ AL FI+ D +S +C+L F + S + L G+P L PI ++ GG
Sbjct: 251 AYALGFIDCDNISARCMLTIFTLFATKTEASLLRMLKGSPDVYLSGPIKKYITDRGGRFH 310
Query: 317 LNSRIQKI--ELNPDGT--VKHFALTDGTQ---ITGDAYVFATPVDILKLLVPQEWKEIS 369
L +++ + +PDG VK L+ T I DAYV A V +K L+P EW++
Sbjct: 311 LRWGCREVLYDKSPDGETYVKGLLLSKATSREIIKADAYVAACDVPGIKRLLPSEWRQWD 370
Query: 370 YFKKLEKLVGVPVINVHIWFD------------RKLKNT--YDHLLFSRSSLLSVYADMS 415
F + KL GVPV+ V + ++ R+LK D+LL++ + S ++D++
Sbjct: 371 TFDNIYKLDGVPVVTVQLRYNGWVTELQDLEKSRQLKKAVGLDNLLYTPDADFSCFSDLA 430
Query: 416 VTC-KEYY-DPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKIL 473
++ +YY + S+++ V P + ++ + EII +++ +LFP + + +
Sbjct: 431 LSSPADYYIEGQGSLIQAVLTPGDPYMPLPNEEIISKVQKQVLELFPSSQGLELTWSS-- 488
Query: 474 KYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQS 533
VVK +S+Y+ P +P RP Q++P++ F+L+G YTKQ Y+ SMEGA LSG+ A
Sbjct: 489 ---VVKIGQSLYRESPGNDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRRTAAY 545
Query: 534 V 534
+
Sbjct: 546 I 546
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,527,709
Number of extensions: 828771
Number of successful extensions: 1866
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1861
Number of HSP's successfully gapped: 2
Length of query: 557
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 451
Effective length of database: 11,501,117
Effective search space: 5187003767
Effective search space used: 5187003767
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)