Os07g0204900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zeta-carotene desaturase (Fragment).
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Os07g0204900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zeta-carotene desaturase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.66 | 0.26 | 14.3 | -0.223 | 0.31 | 0.62 | -0.427 | -0.439 | -0.344 | 21.2 | 19.58 | 1734 | -- | -- |
| 30.85 | 0.259 | 14.3 | -0.272 | 0.317 | 0.752 | -0.391 | -- | -0.367 | 21.1 | 19.11 | 1679 | -- | -- |
| 31.28 | 0.26 | 14.3 | -0.211 | 0.311 | 0.649 | -- | -0.424 | -0.345 | 21.2 | 19.5 | 1730 | -- | -- |
| 31.43 | 0.261 | 14.3 | -0.26 | 0.307 | 0.781 | -- | -- | -0.359 | 21.2 | 19.1 | 1679 | -- | -- |
| 36.7 | 0.282 | 14.3 | -0.22 | -- | 0.66 | -- | -0.495 | -0.351 | -- | 19.1 | 1665 | -- | -- |
| 38.75 | 0.292 | 14.3 | -0.559 | 0.309 | -- | -0.504 | -- | -0.484 | 21.2 | -- | -- | -- | -- |
| 39.64 | 0.295 | 14.3 | -0.542 | 0.31 | -- | -- | -- | -0.484 | 21.3 | -- | -- | -- | -- |
| 36.95 | 0.283 | 14.3 | -0.257 | -- | 0.803 | -- | -- | -0.361 | -- | 19.04 | 1641 | -- | -- |
| 32.56 | 0.266 | 14.3 | -- | 0.303 | 0.829 | -- | -- | -0.297 | 21.4 | 19.08 | 3030 | -- | -- |
| 45.24 | 0.314 | 14.3 | -0.54 | -- | -- | -- | -- | -0.485 | -- | -- | -- | -- | -- |
| 47.37 | 0.322 | 14.3 | -- | 0.31 | -- | -- | -- | -0.423 | 21.1 | -- | -- | -- | -- |
| 37.85 | 0.287 | 14.3 | -- | -- | 0.862 | -- | -- | -0.304 | -- | 18.74 | 2993 | -- | -- |
| 52.94 | 0.34 | 14.3 | -- | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.50 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 18 |
| 2 | 28.60 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 19 |
| 17 | 29.10 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 7 |
| 61 | 30.11 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 63 | 30.16 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 22 |
| 84 | 30.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 88 | 30.53 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 98 | 30.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 110 | 30.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 117 | 30.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 121 | 30.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 137 | 30.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 143 | 30.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 144 | 30.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 149 | 30.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 155 | 30.85 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 172 | 30.90 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 188 | 30.91 | humidity | 60 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 189 | 30.92 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 190 | 30.92 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 207 | 30.94 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 220 | 30.96 | temperature | 20 | 30 | > th | dose independent | sin | 10 | NA |
| 250 | 31.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 309 | 31.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 313 | 31.12 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 316 | 31.12 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 352 | 31.17 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 356 | 31.18 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 358 | 31.18 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 367 | 31.19 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 389 | 31.22 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 397 | 31.22 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 398 | 31.22 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 22 |
| 417 | 31.24 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 424 | 31.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 431 | 31.26 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 441 | 31.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 444 | 31.28 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 452 | 31.29 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 12 |
| 460 | 31.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 465 | 31.30 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 476 | 31.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 510 | 31.33 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 13 |
| 526 | 31.34 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 532 | 31.35 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 540 | 31.35 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 16 |
| 578 | 31.38 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 581 | 31.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 593 | 31.38 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 594 | 31.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 598 | 31.39 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 599 | 31.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 614 | 31.39 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 618 | 31.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 627 | 31.40 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 628 | 31.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 629 | 31.41 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 655 | 31.42 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 709 | 31.44 | wind | 9 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 722 | 31.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 773 | 31.48 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 790 | 31.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 791 | 31.48 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 860 | 31.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 889 | 31.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 922 | 31.54 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |
| 990 | 31.58 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 992 | 31.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |