Os03g0184000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytoene desaturase (Fragment).
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Os03g0184000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytoene desaturase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.45 | 0.255 | 13.2 | -0.736 | 0.256 | -0.501 | -0.487 | 1.12 | -0.578 | 16.4 | 9.66 | 1450 | -- | -- |
| 31.72 | 0.262 | 13.2 | -0.62 | 0.237 | -0.527 | -0.48 | -- | -0.573 | 16.5 | 9.74 | 1477 | -- | -- |
| 30 | 0.255 | 13.2 | -0.737 | 0.238 | -0.521 | -- | 1.17 | -0.578 | 16.6 | 9.604 | 1468 | -- | -- |
| 32.33 | 0.265 | 13.2 | -0.631 | 0.249 | -0.495 | -- | -- | -0.56 | 16.4 | 10.4 | 1477 | -- | -- |
| 31.7 | 0.262 | 13.2 | -0.736 | -- | -0.591 | -- | 1.31 | -0.582 | -- | 11.27 | 1627 | -- | -- |
| 37.46 | 0.287 | 13.1 | -0.613 | 0.262 | -- | -0.579 | -- | -0.455 | 15.9 | -- | -- | -- | -- |
| 38.44 | 0.29 | 13.1 | -0.621 | 0.258 | -- | -- | -- | -0.458 | 15.9 | -- | -- | -- | -- |
| 33.88 | 0.271 | 13.2 | -0.637 | -- | -0.592 | -- | -- | -0.54 | -- | 8.833 | 1638 | -- | -- |
| 42.85 | 0.305 | 13.2 | -- | 0.236 | -0.492 | -- | -- | -0.555 | 16.4 | 10 | 1482 | -- | -- |
| 42.1 | 0.303 | 13.1 | -0.631 | -- | -- | -- | -- | -0.465 | -- | -- | -- | -- | -- |
| 48.6 | 0.326 | 13.1 | -- | 0.27 | -- | -- | -- | -0.389 | 15.8 | -- | -- | -- | -- |
| 43.87 | 0.308 | 13.1 | -- | -- | -0.617 | -- | -- | -0.476 | -- | 10 | 1665 | -- | -- |
| 52.61 | 0.339 | 13.1 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.53 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 28.32 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 6 | 28.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 7 | 28.51 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 8 | 28.52 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 15 | 28.53 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 18 | 28.55 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 34 | 28.62 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 63 | 28.87 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 97 | 29.03 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 100 | 29.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 102 | 29.04 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 118 | 29.10 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 144 | 29.13 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 150 | 29.14 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 158 | 29.16 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 211 | 29.23 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 216 | 29.25 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 234 | 29.32 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 236 | 29.34 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 239 | 29.35 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 247 | 29.38 | radiation | 10.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 258 | 29.41 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 318 | 29.48 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 334 | 29.49 | radiation | 10.0 | 1440 | < th | dose dependent | no | NA | NA |
| 508 | 29.71 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 511 | 29.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 553 | 29.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 554 | 29.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 657 | 29.85 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 715 | 29.93 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 742 | 29.97 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 762 | 30.00 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 767 | 30.01 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 816 | 30.07 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 817 | 30.07 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 894 | 30.16 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 905 | 30.18 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |