BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0176300 Os03g0176300|011-007-C09
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0176300  Similar to WRINKLED1 (Activator of sporamin LU...   204   1e-53
Os07g0124700  Similar to PLETHORA1                                 68   3e-12

>Os03g0176300 Similar to WRINKLED1 (Activator of sporamin LUC 1)
          Length = 145

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 103/145 (71%)

Query: 1   HRAGTQXXXXXXYDIAAIKFRGLNAVTNFDISKYDVKRICSSTHLIGGDLACRRSPTRML 60
           HRAGTQ      YDIAAIKFRGLNAVTNFDISKYDVKRICSSTHLIGGDLACRRSPTRML
Sbjct: 1   HRAGTQEEAAEAYDIAAIKFRGLNAVTNFDISKYDVKRICSSTHLIGGDLACRRSPTRML 60

Query: 61  XXXXXXXXXXXXXXXXXXXHQQIXXXXXXXXXXXXXXXXXHRGAHLLHGLQYAHAMKFEA 120
                              HQQI                 HRGAHLLHGLQYAHAMKFEA
Sbjct: 61  PPDAPAGAAGVDVVVAPGDHQQISAGGGGASDNSDTASDGHRGAHLLHGLQYAHAMKFEA 120

Query: 121 AAARPVAGIPTTVHHQLPVFALWND 145
           AAARPVAGIPTTVHHQLPVFALWND
Sbjct: 121 AAARPVAGIPTTVHHQLPVFALWND 145



>Os07g0124700 Similar to PLETHORA1
          Length = 331

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 38/53 (71%)

Query: 5   TQXXXXXXYDIAAIKFRGLNAVTNFDISKYDVKRICSSTHLIGGDLACRRSPT 57
           TQ      YD+AAIKFRGLNAVTNFDI++YDV +I +S  L+  DLA R + T
Sbjct: 112 TQEEAAEAYDVAAIKFRGLNAVTNFDITRYDVDKIMASNTLLPADLARRNAAT 164



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,662,883
Number of extensions: 99168
Number of successful extensions: 351
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)