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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0176300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRINKLED1 (Activator of sporamin LUC 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0144) R2 : 0.00123
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0228 (0.0304) R2dN8 : 0.00159 R2N8 : 0.00123
σ : 0.272
deviance : 33.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.53 0.26 3.19 0.178 0.139 0.234 -0.0424 0.968 -0.0479 7.42 91.75 5915 -- --
31.76 0.262 3.19 0.142 0.157 0.253 -0.0615 -- -0.0727 7.56 98.04 8051 -- --
30.53 0.257 3.19 0.174 0.138 0.234 -- 0.969 -0.0475 7.52 91 5914 -- --
31.75 0.262 3.19 0.128 0.155 0.255 -- -- -0.0721 7.71 91.98 8076 -- --
31.54 0.262 3.2 0.179 -- 0.233 -- 0.971 -0.043 -- 91.07 5852 -- --
32.75 0.268 3.18 0.0921 0.136 -- -0.0597 -- -0.0148 7.35 -- -- -- --
32.76 0.268 3.18 0.091 0.136 -- -- -- -0.0146 7.5 -- -- -- --
32.63 0.266 3.19 0.161 -- 0.246 -- -- -0.0635 -- 84.08 17297 -- --
32.16 0.264 3.19 -- 0.155 0.224 -- -- -0.0823 7.69 107.3 8063 -- --
33.75 0.271 3.18 0.0931 -- -- -- -- -0.0125 -- -- -- -- --
32.98 0.269 3.18 -- 0.137 -- -- -- -0.0247 7.45 -- -- -- --
33.15 0.268 3.2 -- -- 0.209 -- -- -0.0734 -- 86.02 17302 -- --
33.98 0.272 3.18 -- -- -- -- -- -0.0228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.25 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 28.74 atmosphere 1005.0 10 > th dose dependent rect. 2 2
5 28.76 atmosphere 1005.0 90 > th dose dependent rect. 2 1
10 29.37 temperature 25.0 90 > th dose independent rect. 1 1
11 29.47 temperature 25.0 90 > th dose dependent rect. 1 2
13 29.52 radiation 1.0 43200 < th dose dependent rect. 3 1
14 29.53 atmosphere 995.0 720 > th dose independent rect. 23 16
18 29.59 radiation 1.0 4320 < th dose dependent rect. 3 1
19 29.60 atmosphere 1005.0 90 > th dose independent rect. 2 1
20 29.61 atmosphere 1010.0 10 < th dose dependent rect. 2 1
32 29.65 wind 9.0 1440 < th dose independent rect. 3 1
33 29.65 temperature 10.0 1440 > th dose independent rect. 3 1
36 29.65 temperature 30.0 1440 < th dose independent rect. 3 1
40 29.65 humidity 50.0 1440 > th dose independent rect. 3 1
49 29.65 atmosphere 995.0 1440 > th dose independent rect. 3 1
50 29.65 radiation 1.0 1440 < th dose independent rect. 3 1
70 29.65 temperature 10.0 1440 > th dose independent rect. 4 23
84 29.67 wind 3.0 30 < th dose independent rect. 2 1
88 29.67 wind 5.0 30 < th dose dependent rect. 2 1
91 29.67 temperature 10.0 30 > th dose dependent rect. 2 1
96 29.68 temperature 10.0 30 > th dose independent rect. 2 1
98 29.68 temperature 30.0 30 < th dose independent rect. 2 1
99 29.68 humidity 50.0 30 > th dose independent rect. 2 1
102 29.68 humidity 90.0 30 > th dose independent rect. 2 1
103 29.68 atmosphere 995.0 30 > th dose independent rect. 2 1
106 29.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
108 29.68 radiation 1.0 30 < th dose independent rect. 2 1
113 29.68 precipitation 0.1 30 < th dose independent rect. 2 1
114 29.68 temperature 10.0 30 > th dose independent rect. 3 23
116 29.68 humidity 50.0 30 > th dose dependent rect. 2 1
124 29.68 radiation 1.0 30 < th dose dependent rect. 2 1
129 29.68 precipitation 0.1 30 < th dose dependent rect. 2 1
133 29.70 wind 1.0 30 > th dose independent rect. 2 1
137 29.71 temperature 30.0 30 < th dose dependent rect. 2 1
152 29.76 precipitation 0.1 30 < th dose independent rect. 3 23
154 29.76 precipitation 0.1 30 < th dose dependent rect. 3 23
193 29.86 atmosphere 1000.0 720 > th dose independent rect. 3 8
204 29.91 humidity 80.0 14400 < th dose dependent rect. 2 7
209 29.95 humidity 90.0 90 < th dose independent rect. 2 1
211 29.98 wind 9.0 30 < th dose independent rect. 3 23
213 29.99 humidity 80.0 14400 < th dose dependent rect. 21 13
248 30.11 precipitation 0.1 720 < th dose independent rect. 15 8
250 30.11 precipitation 0.1 720 < th dose dependent rect. 15 8
261 30.23 humidity 70.0 14400 > th dose independent rect. 20 14
262 30.23 humidity 50.0 30 > th dose independent rect. 3 23
264 30.24 humidity 70.0 14400 > th dose independent rect. 6 4
279 30.27 humidity 70.0 14400 < th dose independent rect. 8 2
280 30.28 humidity 70.0 14400 < th dose independent rect. 21 13
296 30.30 precipitation 0.1 720 < th dose independent rect. 11 16
298 30.30 precipitation 0.1 720 < th dose dependent rect. 11 16
300 30.31 temperature 10.0 720 > th dose independent rect. 15 8
301 30.31 temperature 10.0 720 > th dose independent rect. 23 16
305 30.33 atmosphere 995.0 720 > th dose independent rect. 7 8
313 30.40 temperature 10.0 720 > th dose independent rect. 3 8
315 30.40 temperature 10.0 720 > th dose independent rect. 11 16
316 30.41 atmosphere 1000.0 10 > th dose independent rect. 21 23
326 30.47 wind 3.0 14400 > th dose independent rect. 19 1
329 30.49 humidity 50.0 720 > th dose independent rect. 3 8
334 30.51 wind 9.0 720 < th dose independent rect. 3 8
344 30.56 humidity 70.0 4320 > th dose independent rect. 10 1
349 30.58 wind 1.0 14400 < th dose dependent rect. 6 1
350 30.59 wind 3.0 14400 < th dose independent rect. 19 1
355 30.60 humidity 80.0 14400 < th dose dependent sin 8 NA
360 30.61 humidity 70.0 4320 > th dose dependent rect. 3 8
364 30.62 humidity 80.0 4320 > th dose dependent rect. 7 2
386 30.65 wind 1.0 14400 < th dose independent rect. 4 3
389 30.65 wind 5.0 14400 < th dose dependent rect. 11 1
391 30.66 wind 3.0 14400 > th dose independent rect. 10 2
400 30.67 humidity 70.0 4320 < th dose independent rect. 10 1
412 30.69 humidity 70.0 4320 > th dose independent rect. 8 7
413 30.69 atmosphere 1000.0 30 < th dose independent rect. 7 20
420 30.70 atmosphere 1000.0 10 > th dose independent rect. 14 12
424 30.70 humidity 50.0 14400 > th dose dependent rect. 8 1
431 30.71 wind 1.0 14400 > th dose independent rect. 4 3
432 30.71 humidity 90.0 720 < th dose independent rect. 1 3
487 30.72 wind 1.0 14400 < th dose dependent rect. 4 3
496 30.72 humidity 50.0 4320 > th dose dependent rect. 23 16
497 30.73 humidity 70.0 4320 > th dose independent sin 2 NA
573 30.75 wind 3.0 14400 < th dose independent rect. 10 2
580 30.75 wind 9.0 720 < th dose independent rect. 15 8
584 30.75 humidity 70.0 4320 < th dose independent rect. 8 9
596 30.75 humidity 50.0 4320 > th dose dependent rect. 11 2
637 30.76 humidity 50.0 4320 > th dose dependent sin 4 NA
639 30.76 humidity 90.0 90 < th dose dependent rect. 2 1
649 30.76 atmosphere 995.0 30 > th dose dependent rect. 3 23
658 30.77 radiation 40.0 720 < th dose independent rect. 15 8
660 30.77 atmosphere 1000.0 720 > th dose independent rect. 21 14
713 30.78 humidity 90.0 4320 < th dose dependent rect. 3 13
716 30.78 humidity 90.0 4320 < th dose dependent rect. 23 16
723 30.79 humidity 70.0 4320 < th dose independent rect. 10 8
801 30.80 humidity 80.0 4320 < th dose dependent rect. 11 2
822 30.81 humidity 70.0 4320 < th dose independent sin 2 NA
865 30.82 wind 5.0 14400 < th dose independent rect. 11 4
912 30.83 humidity 70.0 4320 > th dose independent rect. 16 23
913 30.83 atmosphere 995.0 720 > th dose independent rect. 3 23
916 30.83 humidity 90.0 4320 < th dose dependent sin 4 NA
926 30.83 wind 1.0 14400 < th dose dependent rect. 2 6
947 30.84 humidity 70.0 4320 > th dose independent no NA NA
953 30.84 wind 5.0 14400 < th dose independent rect. 10 7