BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0170600 Os03g0170600|AY554028
         (143 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0170600  Conserved hypothetical protein                      185   8e-48
Os10g0404900  Similar to HAHB-5 (Fragment)                         93   7e-20

>Os03g0170600 Conserved hypothetical protein
          Length = 143

 Score =  185 bits (470), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 97/143 (67%)

Query: 1   GREAASELINLNKETEASCSNRSENSSEINLDISRXXXXXXXXXXXXXXXXXXXXXXXXX 60
           GREAASELINLNKETEASCSNRSENSSEINLDISR                         
Sbjct: 1   GREAASELINLNKETEASCSNRSENSSEINLDISRTPPPDAAALDTAPTAHHHHHGGGGG 60

Query: 61  XXXXXXMIPFYTSIARPASGGGVDIDQLLHSSSXXXXXXXXXXXXXXXNVQAASVDTASF 120
                 MIPFYTSIARPASGGGVDIDQLLHSSS               NVQAASVDTASF
Sbjct: 61  GGGGGGMIPFYTSIARPASGGGVDIDQLLHSSSGGAGGPKMEHHGGGGNVQAASVDTASF 120

Query: 121 GNLLCGVDEPPPFWPWPDHQHFH 143
           GNLLCGVDEPPPFWPWPDHQHFH
Sbjct: 121 GNLLCGVDEPPPFWPWPDHQHFH 143



>Os10g0404900 Similar to HAHB-5 (Fragment)
          Length = 351

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 77/155 (49%), Gaps = 28/155 (18%)

Query: 2   REAASELINLN-KETEASCSNRSENSSEINLDISRXXXXXXXXXXXXXXXXXXXXXXXXX 60
           +EAASELINLN KETEASCSNRSENSSEINLDISR                         
Sbjct: 212 QEAASELINLNVKETEASCSNRSENSSEINLDISRPAPPPPPPPANESPVNRG------- 264

Query: 61  XXXXXXMIPFYTSIARPASGGGVDIDQLL----HSSSXXXXXXXXXXXXX------XXNV 110
                  IPFY SI R    GGVDIDQLL    HS S                       
Sbjct: 265 -------IPFYASIGR-GGAGGVDIDQLLLRGGHSPSPAAVTTPPPPKMELGITGNGGGA 316

Query: 111 QAASVDTASFGNLLCG-VDEPPPFWPWPD-HQHFH 143
            AA+    SFG LLCG VDE PPFWPW D H HFH
Sbjct: 317 DAAAAGAGSFGGLLCGAVDEQPPFWPWADGHHHFH 351



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,629,704
Number of extensions: 75874
Number of successful extensions: 153
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)