BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0169900 Os03g0169900|AK063222
         (116 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0169900  Conserved hypothetical protein                      183   2e-47
Os10g0405300  Conserved hypothetical protein                      133   2e-32

>Os03g0169900 Conserved hypothetical protein
          Length = 116

 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 90/107 (84%)

Query: 10  RNGWMTVPAFGDWDMKNGALPDYSMDFSKIREMRKQNKKELSRTSLGGDDDLLXXXXXXX 69
           RNGWMTVPAFGDWDMKNGALPDYSMDFSKIREMRKQNKKELSRTSLGGDDDLL       
Sbjct: 10  RNGWMTVPAFGDWDMKNGALPDYSMDFSKIREMRKQNKKELSRTSLGGDDDLLAQQKQQQ 69

Query: 70  XXXXXXXXXXNLGRPADDHRHRQLHGRHGSPTGRRTFLSYFQCCIKA 116
                     NLGRPADDHRHRQLHGRHGSPTGRRTFLSYFQCCIKA
Sbjct: 70  PQPQQKPAKANLGRPADDHRHRQLHGRHGSPTGRRTFLSYFQCCIKA 116



>Os10g0405300 Conserved hypothetical protein
          Length = 118

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 76/106 (71%), Gaps = 5/106 (4%)

Query: 12  GWMTVPAFGDWDMKNGALPDYSMDFSKIREMRKQNKKELSRTSLGGDDDLLXXXXXXXXX 71
           GWMTVPAFG+WDMKNGA+PDYSMDFSKIREMRKQNK+ELSR SLGGDDDLL         
Sbjct: 17  GWMTVPAFGEWDMKNGAVPDYSMDFSKIREMRKQNKRELSRASLGGDDDLLAAQQHKAAA 76

Query: 72  XXXXXXXXNLGRPADDHRHRQLHGRH-GSPTGRRTFLSYFQCCIKA 116
                        ADDHR R LH  H  SPTGR+ FLSYFQCCI+A
Sbjct: 77  PQPAPNASAA---ADDHR-RPLHAAHDDSPTGRKKFLSYFQCCIRA 118



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,803,868
Number of extensions: 119654
Number of successful extensions: 288
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)