Os10g0405300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0405300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.21 | 0.25 | 12.4 | 0.0321 | 0.748 | 0.477 | 0.07 | -0.268 | 0.169 | 2.99 | 20.1 | 3578 | -- | -- |
| 28.35 | 0.248 | 12.4 | 0.0537 | 0.735 | 0.523 | 0.0706 | -- | 0.175 | 3.02 | 20.1 | 3674 | -- | -- |
| 28 | 0.246 | 12.4 | 0.0565 | 0.751 | 0.429 | -- | -0.286 | 0.165 | 3.04 | 21.1 | 3746 | -- | -- |
| 28.27 | 0.248 | 12.4 | 0.0837 | 0.75 | 0.49 | -- | -- | 0.156 | 3 | 21 | 3762 | -- | -- |
| 59.4 | 0.359 | 12.4 | 0.0019 | -- | 0.51 | -- | -0.332 | 0.162 | -- | 21.11 | 3866 | -- | -- |
| 33.36 | 0.271 | 12.3 | 0.379 | 0.762 | -- | 0.0439 | -- | 0.32 | 2.92 | -- | -- | -- | -- |
| 33.36 | 0.27 | 12.3 | 0.378 | 0.762 | -- | -- | -- | 0.319 | 2.93 | -- | -- | -- | -- |
| 59.15 | 0.358 | 12.4 | 0.111 | -- | 0.583 | -- | -- | 0.186 | -- | 20.63 | 2480 | -- | -- |
| 28.39 | 0.248 | 12.4 | -- | 0.741 | 0.532 | -- | -- | 0.151 | 3.02 | 20.87 | 3825 | -- | -- |
| 66.83 | 0.382 | 12.3 | 0.411 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 37.14 | 0.285 | 12.4 | -- | 0.77 | -- | -- | -- | 0.277 | 2.93 | -- | -- | -- | -- |
| 59.08 | 0.358 | 12.4 | -- | -- | 0.642 | -- | -- | 0.169 | -- | 19.9 | 2513 | -- | -- |
| 71.29 | 0.394 | 12.4 | -- | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 2 | 28.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 10 | 28.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 21 | 28.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 77 | 28.27 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 83 | 28.27 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 85 | 28.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 119 | 28.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 129 | 28.33 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 182 | 28.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 184 | 28.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 202 | 28.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 254 | 28.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 327 | 28.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 336 | 28.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 348 | 28.54 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 482 | 28.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 507 | 28.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 508 | 28.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 534 | 28.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 546 | 28.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 571 | 28.68 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 599 | 28.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 613 | 28.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 618 | 28.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 623 | 28.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 9 |
| 655 | 28.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 19 |
| 667 | 28.71 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 673 | 28.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 676 | 28.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 696 | 28.72 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 712 | 28.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 717 | 28.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 721 | 28.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 727 | 28.73 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 755 | 28.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 781 | 28.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 816 | 28.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 849 | 28.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 876 | 28.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 896 | 28.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 929 | 28.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 963 | 28.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |