Os03g0169900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0169900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.35 | 0.429 | 12.4 | -0.0531 | 1.49 | -0.776 | -0.937 | -1.04 | -0.08 | 15.9 | 27.72 | 1322 | -- | -- |
| 83.8 | 0.426 | 12.4 | 0.134 | 1.5 | -0.836 | -1.04 | -- | -0.102 | 15.8 | 28.47 | 1294 | -- | -- |
| 85.8 | 0.431 | 12.4 | -0.0291 | 1.49 | -0.787 | -- | -0.857 | -0.0644 | 16 | 27.48 | 1329 | -- | -- |
| 85.87 | 0.432 | 12.4 | 0.169 | 1.48 | -0.881 | -- | -- | -0.0607 | 16 | 27.85 | 1310 | -- | -- |
| 201.08 | 0.66 | 12.3 | 0.258 | -- | -1.33 | -- | 0.21 | 0.0776 | -- | 25.07 | 1234 | -- | -- |
| 120.11 | 0.514 | 12.3 | -0.093 | 1.6 | -- | -0.718 | -- | -0.0045 | 15.8 | -- | -- | -- | -- |
| 121.61 | 0.516 | 12.3 | -0.104 | 1.6 | -- | -- | -- | -0.00851 | 15.8 | -- | -- | -- | -- |
| 200.91 | 0.66 | 12.3 | 0.242 | -- | -1.29 | -- | -- | 0.106 | -- | 25 | 1228 | -- | -- |
| 86.52 | 0.433 | 12.4 | -- | 1.48 | -0.854 | -- | -- | -0.0827 | 16 | 27.98 | 1293 | -- | -- |
| 262.05 | 0.756 | 12.3 | -0.17 | -- | -- | -- | -- | -0.0511 | -- | -- | -- | -- | -- |
| 121.89 | 0.516 | 12.3 | -- | 1.6 | -- | -- | -- | 0.00303 | 15.8 | -- | -- | -- | -- |
| 202.29 | 0.662 | 12.3 | -- | -- | -1.22 | -- | -- | 0.0598 | -- | 25.11 | 1224 | -- | -- |
| 262.81 | 0.757 | 12.3 | -- | -- | -- | -- | -- | -0.0323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.53 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 2 | 78.82 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 16 | 79.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 18 | 80.42 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 20 | 80.44 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 47 | 80.51 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 48 | 80.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 55 | 80.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 4 |
| 58 | 80.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 66 | 81.32 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 68 | 81.45 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 92 | 82.17 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 101 | 82.60 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 115 | 82.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 117 | 82.83 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 129 | 83.09 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 149 | 83.25 | humidity | 70 | 1440 | < th | dose independent | sin | 12 | NA |
| 150 | 83.27 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 188 | 83.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 227 | 83.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 232 | 83.71 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 264 | 83.86 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 265 | 83.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 282 | 83.93 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 350 | 84.11 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 477 | 84.55 | humidity | 60 | 1440 | > th | dose independent | sin | 15 | NA |
| 491 | 84.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 492 | 84.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 502 | 84.67 | humidity | 70 | 1440 | > th | dose independent | sin | 11 | NA |
| 503 | 84.67 | humidity | 60 | 1440 | < th | dose independent | sin | 15 | NA |
| 523 | 84.69 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 612 | 84.84 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 706 | 84.86 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 719 | 84.93 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 755 | 85.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 804 | 85.09 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 809 | 85.10 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 852 | 85.13 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 856 | 85.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 861 | 85.15 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 876 | 85.19 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 880 | 85.20 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 884 | 85.21 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 888 | 85.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 897 | 85.24 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 899 | 85.24 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 952 | 85.28 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 967 | 85.32 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 976 | 85.33 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 979 | 85.34 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 12 |