BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0169900 Os03g0169900|AK063222
(116 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09960.1 | chr5:3106503-3107658 FORWARD LENGTH=113 95 7e-21
AT5G64850.1 | chr5:25921585-25923038 FORWARD LENGTH=115 87 2e-18
AT5G19473.1 | chr5:6569268-6570680 FORWARD LENGTH=100 55 9e-09
>AT5G09960.1 | chr5:3106503-3107658 FORWARD LENGTH=113
Length = 112
Score = 95.1 bits (235), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 13 WMTVPAFGDWDMKNG-ALPDYSMDFSKIREMRKQNKKELSRTSLGGDDDLLXXXXXXXXX 71
W++VP FGDWD K G +PDYSMDF+KIREMRKQNK++ SR SLG +++L+
Sbjct: 12 WLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELIKPPESATST 71
Query: 72 XXXXXXXXNLGRPADDHRHRQLHGRHGSPTGRRTFLSYFQCCIKA 116
R H Q H SP+ RR+ S F CC+KA
Sbjct: 72 AELTTVQSENQREFSPSHHHQPH----SPSTRRSMFSCFNCCVKA 112
>AT5G64850.1 | chr5:25921585-25923038 FORWARD LENGTH=115
Length = 114
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 13 WMTVPAFGDWDMKNGALPDYSMDFSKIREMRKQNKKELSRTSLGGDDDLLXXXXXXXXXX 72
W++VP FGDWD K G++ DYSMDFSKIREMRK NK++ SR SLG +++L+
Sbjct: 12 WLSVPQFGDWDQKGGSI-DYSMDFSKIREMRKLNKRDASRASLGNEEELINPFHDQPPVD 70
Query: 73 XXXXXXXNLGRPADDHRHRQLHGRHGSPTGRRTFLSYFQCCIKA 116
+++R+ H SP+ RR S F CC+KA
Sbjct: 71 TAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114
>AT5G19473.1 | chr5:6569268-6570680 FORWARD LENGTH=100
Length = 99
Score = 54.7 bits (130), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 29/111 (26%)
Query: 12 GWMTVPAFGDWDMK--NGALPDYSMDFSKIREMRKQNKKELSRTSLGGDDDLLXXXXXXX 69
W VP FG WD K N A +YS+ FSK R RKQNK + +SLG + +L+
Sbjct: 9 AWTPVPQFGGWDQKGPNDAT-NYSVVFSKARANRKQNKAGVRHSSLGSEQELMVSVRRN- 66
Query: 70 XXXXXXXXXXNLGRPADDHRHRQLHGRHGSP-----TGRRTFLSYFQCCIK 115
H+QLH RH + ++ L+Y CCI+
Sbjct: 67 --------------------HQQLHHRHETQDDDPVMKKKRILTYINCCIR 97
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,282,400
Number of extensions: 69284
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)