BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0169400 Os03g0169400|AK068500
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0169400  Ribosomal protein L18P/L5E family protein           290   4e-79
Os03g0828100  Similar to 50S ribosomal protein L18                 73   8e-14

>Os03g0169400 Ribosomal protein L18P/L5E family protein
          Length = 175

 Score =  290 bits (741), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 146/175 (83%), Positives = 146/175 (83%)

Query: 1   MASLRAAPGLXXXXXXXXXXXXXXXGVQFFTPXXXXXXXXXXXXXXYPRIEATARHGARK 60
           MASLRAAPGL               GVQFFTP              YPRIEATARHGARK
Sbjct: 1   MASLRAAPGLPFSPRPACCRPPSSPGVQFFTPASAGGAGGVGRRRSYPRIEATARHGARK 60

Query: 61  ENPKVRNRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNRKILFYGSTLQKAICGDPP 120
           ENPKVRNRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNRKILFYGSTLQKAICGDPP
Sbjct: 61  ENPKVRNRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNRKILFYGSTLQKAICGDPP 120

Query: 121 CGAVEAAGRVGEELIRACKELDITEISSYDRNGFARGEKMMAFEVPVSQYGFLPR 175
           CGAVEAAGRVGEELIRACKELDITEISSYDRNGFARGEKMMAFEVPVSQYGFLPR
Sbjct: 121 CGAVEAAGRVGEELIRACKELDITEISSYDRNGFARGEKMMAFEVPVSQYGFLPR 175



>Os03g0828100 Similar to 50S ribosomal protein L18
          Length = 170

 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 4/92 (4%)

Query: 66  RNRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNRKILFYGSTLQKAICGDPPCGA-- 123
           R+ RL+KK +GT  +PRLSVF SN+ LYA ++DD     L   ST+ K++  D    A  
Sbjct: 60  RHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGP 119

Query: 124 -VEAAGRVGEELIRACKELDITEISSYDRNGF 154
            VE A ++GE + ++C E  IT++  +DR GF
Sbjct: 120 TVEVAQKIGEVIAKSCLEKGITKV-VFDRGGF 150



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,920,423
Number of extensions: 172792
Number of successful extensions: 420
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)