Os03g0828100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L18.
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Os03g0828100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L18.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.64 | 0.626 | 13.4 | -0.268 | 2.82 | -1.06 | 0.223 | -0.346 | -0.604 | 21.6 | 29 | 1625 | -- | -- |
| 177.11 | 0.62 | 13.4 | -0.335 | 2.78 | -1.14 | 0.235 | -- | -0.612 | 21.7 | 28.9 | 1712 | -- | -- |
| 177.22 | 0.62 | 13.4 | -0.347 | 2.79 | -1.14 | -- | -0.12 | -0.612 | 21.7 | 28.9 | 1712 | -- | -- |
| 177.19 | 0.62 | 13.4 | -0.371 | 2.79 | -1.15 | -- | -- | -0.628 | 21.7 | 28.93 | 1711 | -- | -- |
| 454.63 | 0.993 | 13.5 | -1.05 | -- | -3.01 | -- | 5 | -0.936 | -- | 28.16 | 810 | -- | -- |
| 227.58 | 0.707 | 13.4 | -0.0163 | 2.88 | -- | 0.295 | -- | -0.475 | 21.6 | -- | -- | -- | -- |
| 227.91 | 0.707 | 13.4 | -0.0272 | 2.87 | -- | -- | -- | -0.475 | 21.6 | -- | -- | -- | -- |
| 414.8 | 0.949 | 13.5 | -0.803 | -- | -2.61 | -- | -- | -1.24 | -- | 25.95 | 728 | -- | -- |
| 180.6 | 0.626 | 13.4 | -- | 2.78 | -1.08 | -- | -- | -0.585 | 21.7 | 28.9 | 1716 | -- | -- |
| 716.21 | 1.25 | 13.3 | -0.00476 | -- | -- | -- | -- | -0.482 | -- | -- | -- | -- | -- |
| 227.93 | 0.706 | 13.4 | -- | 2.87 | -- | -- | -- | -0.472 | 21.6 | -- | -- | -- | -- |
| 430.77 | 0.967 | 13.4 | -- | -- | -2.46 | -- | -- | -1.11 | -- | 25.93 | 718 | -- | -- |
| 716.21 | 1.25 | 13.3 | -- | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 8 | 172.86 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 11 | 173.14 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 40 | 175.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 43 | 175.51 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 51 | 176.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 55 | 176.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 67 | 177.10 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 17 |
| 89 | 177.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 21 |
| 97 | 178.33 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 116 | 178.84 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 118 | 178.87 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 10 |
| 124 | 179.03 | temperature | 20.0 | 90 | > th | dose independent | rect. | 6 | 7 |
| 131 | 179.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 136 | 179.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 138 | 179.22 | radiation | 30.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 160 | 179.80 | temperature | 30.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 174 | 180.10 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 176 | 180.16 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 186 | 180.35 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 194 | 180.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 222 | 180.76 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 232 | 180.87 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 242 | 181.01 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 249 | 181.08 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 253 | 181.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 270 | 181.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 8 |
| 272 | 181.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 281 | 181.34 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 282 | 181.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 283 | 181.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 286 | 181.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 314 | 181.58 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 337 | 181.72 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 21 | 22 |
| 353 | 181.83 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 373 | 181.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 376 | 182.01 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 377 | 182.02 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 422 | 182.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 426 | 182.29 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 431 | 182.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 438 | 182.34 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 449 | 182.38 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 451 | 182.40 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 456 | 182.42 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 462 | 182.43 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 472 | 182.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 477 | 182.50 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 491 | 182.53 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 528 | 182.68 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 534 | 182.70 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 542 | 182.71 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 552 | 182.75 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 579 | 182.82 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 589 | 182.88 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 15 |
| 599 | 182.90 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 20 |
| 620 | 182.94 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 623 | 182.94 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 625 | 182.95 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 643 | 183.01 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 645 | 183.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 662 | 183.07 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 671 | 183.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 672 | 183.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 682 | 183.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 687 | 183.15 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 696 | 183.17 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 772 | 183.36 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 785 | 183.38 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 791 | 183.40 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 810 | 183.44 | wind | 1.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 817 | 183.46 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 837 | 183.50 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 850 | 183.52 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 851 | 183.53 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 853 | 183.53 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 858 | 183.54 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 880 | 183.59 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 883 | 183.59 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 929 | 183.67 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 934 | 183.68 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 935 | 183.68 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 944 | 183.69 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 956 | 183.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |