BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0168300 Os03g0168300|AK069941
(280 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0168300 Conserved hypothetical protein 574 e-164
Os07g0633000 Conserved hypothetical protein 167 1e-41
>Os03g0168300 Conserved hypothetical protein
Length = 280
Score = 574 bits (1479), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MALLSVSSSHHAIHPGSSRSMQCICTRVTPSRSVGEISRSRSRNDLPLGVSPSSRMLTTC 60
MALLSVSSSHHAIHPGSSRSMQCICTRVTPSRSVGEISRSRSRNDLPLGVSPSSRMLTTC
Sbjct: 1 MALLSVSSSHHAIHPGSSRSMQCICTRVTPSRSVGEISRSRSRNDLPLGVSPSSRMLTTC 60
Query: 61 TLKTPSYGNKSKSKEKINPRDMFTFSYRFNTDIPMTETPGASIDEYLQNRPRIVGAVFPD 120
TLKTPSYGNKSKSKEKINPRDMFTFSYRFNTDIPMTETPGASIDEYLQNRPRIVGAVFPD
Sbjct: 61 TLKTPSYGNKSKSKEKINPRDMFTFSYRFNTDIPMTETPGASIDEYLQNRPRIVGAVFPD 120
Query: 121 KRKRTKLSDEEWSVQLLPIQFLFLSASPVIVMRFVSKSGGKEYPPHVPVKATSLLLMEVT 180
KRKRTKLSDEEWSVQLLPIQFLFLSASPVIVMRFVSKSGGKEYPPHVPVKATSLLLMEVT
Sbjct: 121 KRKRTKLSDEEWSVQLLPIQFLFLSASPVIVMRFVSKSGGKEYPPHVPVKATSLLLMEVT 180
Query: 181 DYKLDGLDSNAMPSHLALTVRGSLYPRPEGRKSLRGHVEMSVGFNLPPVLALVPEGVIRG 240
DYKLDGLDSNAMPSHLALTVRGSLYPRPEGRKSLRGHVEMSVGFNLPPVLALVPEGVIRG
Sbjct: 181 DYKLDGLDSNAMPSHLALTVRGSLYPRPEGRKSLRGHVEMSVGFNLPPVLALVPEGVIRG 240
Query: 241 VGETVLRQLALQMKQDFDNGLAADFKRYRREKLTEKKTTP 280
VGETVLRQLALQMKQDFDNGLAADFKRYRREKLTEKKTTP
Sbjct: 241 VGETVLRQLALQMKQDFDNGLAADFKRYRREKLTEKKTTP 280
>Os07g0633000 Conserved hypothetical protein
Length = 416
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 128/196 (65%), Gaps = 12/196 (6%)
Query: 89 FNTDIPMTETPGASIDEYLQNRPRIVGAVFPDKRKRTKLSDEEWSVQLLPIQFLFLSASP 148
+TD+P+ E G S DEYL +R R+ A+FPD+ + +LSDEEW VQ+LP+QFL L+ P
Sbjct: 89 ISTDMPLYEPTGVSFDEYLLDRARVFRAMFPDESRSQRLSDEEWRVQMLPLQFLLLTVHP 148
Query: 149 VIVMRFVSKSGGKEY--PPHVPVKATSLLLM-------EVTDYKLDGLDSNAMPSHLALT 199
V+VM+ + G + P V+A L + T+++L GL+ + P+ L
Sbjct: 149 VVVMQLRHRDGVLDLRIQPLNRVRAMCLFVCLFGPEGAAQTEWELRGLERDYAPASFDLG 208
Query: 200 VRGSLYP-RPEGRKS--LRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQLALQMKQD 256
VRGSLY R GR++ LRGH+E+S+G LPP + LVP V+RGV E+VL++LA +MKQD
Sbjct: 209 VRGSLYADRSRGRRACRLRGHLEISIGCVLPPPMRLVPGAVMRGVAESVLQRLAEKMKQD 268
Query: 257 FDNGLAADFKRYRREK 272
D G+ ADF+R+RREK
Sbjct: 269 VDVGIVADFQRFRREK 284
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,861,054
Number of extensions: 418289
Number of successful extensions: 872
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 180
Effective length of database: 11,814,401
Effective search space: 2126592180
Effective search space used: 2126592180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)