BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0168000 Os03g0168000|AK072898
(457 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0168000 Conserved hypothetical protein 905 0.0
Os07g0578200 Conserved hypothetical protein 569 e-162
Os06g0628200 169 3e-42
>Os03g0168000 Conserved hypothetical protein
Length = 457
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MADAKGDEVLAEGQMPLGRWPILSYGVGHMLNDITSACWFTYLLLFLQEIGLAPRDAAIV 60
MADAKGDEVLAEGQMPLGRWPILSYGVGHMLNDITSACWFTYLLLFLQEIGLAPRDAAIV
Sbjct: 1 MADAKGDEVLAEGQMPLGRWPILSYGVGHMLNDITSACWFTYLLLFLQEIGLAPRDAAIV 60
Query: 61 MLSGQVADGLMTILAGEMIDRFGHFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLV 120
MLSGQVADGLMTILAGEMIDRFGHFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLV
Sbjct: 61 MLSGQVADGLMTILAGEMIDRFGHFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLV 120
Query: 121 RTIGYSFFAAVFNIGWAATQVSHMSMVNCMTLNSTSRVALASCRNAFTMVANLGLYAIAL 180
RTIGYSFFAAVFNIGWAATQVSHMSMVNCMTLNSTSRVALASCRNAFTMVANLGLYAIAL
Sbjct: 121 RTIGYSFFAAVFNIGWAATQVSHMSMVNCMTLNSTSRVALASCRNAFTMVANLGLYAIAL 180
Query: 181 VVFALVSAKACSDIVLQYRWIAYVSIFVGCCFLVVFYAGTKEPTLQSGSDCKKSARISWG 240
VVFALVSAKACSDIVLQYRWIAYVSIFVGCCFLVVFYAGTKEPTLQSGSDCKKSARISWG
Sbjct: 181 VVFALVSAKACSDIVLQYRWIAYVSIFVGCCFLVVFYAGTKEPTLQSGSDCKKSARISWG 240
Query: 241 YWFKKALYYQVALLYMLARLITNVSQSLIAFYVTRDLKMNEYSKAIIPAIIFCCSFLVSV 300
YWFKKALYYQVALLYMLARLITNVSQSLIAFYVTRDLKMNEYSKAIIPAIIFCCSFLVSV
Sbjct: 241 YWFKKALYYQVALLYMLARLITNVSQSLIAFYVTRDLKMNEYSKAIIPAIIFCCSFLVSV 300
Query: 301 VLQEIKWNSRRLKSLLTIGAILWVIAGAAVFVLPSQMHNLMYPLAMVIGAANALVMVTTI 360
VLQEIKWNSRRLKSLLTIGAILWVIAGAAVFVLPSQMHNLMYPLAMVIGAANALVMVTTI
Sbjct: 301 VLQEIKWNSRRLKSLLTIGAILWVIAGAAVFVLPSQMHNLMYPLAMVIGAANALVMVTTI 360
Query: 361 GLESALVGDDLNGCAFVYGSLSFLDKMSCGIALFVLESYEDSISCGETRGLYTVSRFGTG 420
GLESALVGDDLNGCAFVYGSLSFLDKMSCGIALFVLESYEDSISCGETRGLYTVSRFGTG
Sbjct: 361 GLESALVGDDLNGCAFVYGSLSFLDKMSCGIALFVLESYEDSISCGETRGLYTVSRFGTG 420
Query: 421 LIPSCFAVFALLVTSTLKLQDTNPR 445
LIPSCFAVFALLVTSTLKLQDTNPR
Sbjct: 421 LIPSCFAVFALLVTSTLKLQDTNPR 445
>Os07g0578200 Conserved hypothetical protein
Length = 454
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/439 (61%), Positives = 342/439 (77%), Gaps = 6/439 (1%)
Query: 10 LAEGQMPLGRWPILSYGVGHMLNDITSACWFTYLLLFLQEIGLAPRDAAIVMLSGQVADG 69
+ E PLGR PILSYG GHMLNDITS+CWFTYLL+FL +IGL+P DAA+VMLSGQ+ADG
Sbjct: 11 IEELDEPLGRVPILSYGSGHMLNDITSSCWFTYLLVFLTDIGLSPSDAAVVMLSGQLADG 70
Query: 70 LMTILAGEMIDRFGHFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLVRTIGYSFFA 129
TI GE+IDRFGHFKLWH GGSILV ISFSSVFG CL C + GT S + T+GYS FA
Sbjct: 71 FATIFVGELIDRFGHFKLWHAGGSILVAISFSSVFGSCLPCKLTGTISSTMETVGYSTFA 130
Query: 130 AVFNIGWAATQVSHMSMVNCMTLNSTSRVALASCRNAFTMVANLGLYAIALVVFALVSAK 189
A+FN+GWA TQVSHMSMVNCMT N TSRVAL SCRNAFTM+ANL LY IAL++F+L +
Sbjct: 131 AIFNVGWAVTQVSHMSMVNCMTSNPTSRVALVSCRNAFTMIANLSLYGIALLIFSL---R 187
Query: 190 ACSDIVLQYRWIAYVSIFVGCCFLVVFYAGTKEPTLQSGSDCKKSARISWGYWFKKALYY 249
+++QYRWIAYVSI +G CF+VVF GT+EP L K+ +RISW +WFKK LYY
Sbjct: 188 QSVSVIVQYRWIAYVSIALGSCFVVVFLIGTEEPGLNQHCQNKRLSRISWTHWFKKVLYY 247
Query: 250 QVALLYMLARLITNVSQSLIAFYVTRDLKMNEYSKAIIPAIIFCCSFLVSVVLQEIKWNS 309
QVAL+YM RL+TNVSQ+L+AFYV DL+M + SKA++PAII+ CS +VSV+LQE +W+S
Sbjct: 248 QVALVYMFTRLVTNVSQALLAFYVINDLEMPQSSKALVPAIIYVCSLIVSVILQETRWSS 307
Query: 310 RRLKSLLTIGAILWVIAGAAVFVLPSQMHNLMYPLAMVIGAANALVMVTTIGLESALVGD 369
RLK+ + GA+LW+++G + VLPS MHN MY L++ IG ANAL+ VT+I +E LVG+
Sbjct: 308 WRLKNYFSAGAMLWILSGVGIVVLPSGMHNFMYALSITIGVANALMTVTSISMEGILVGE 367
Query: 370 DLNGCAFVYGSLSFLDKMSCGIALFVLESYEDSISCGETRGL---YTVSRFGTGLIPSCF 426
DLNGCAFVYGSLSF+DK+SCG+AL++LESY+ S + + L Y+V+R G GL+P+
Sbjct: 368 DLNGCAFVYGSLSFVDKVSCGLALYILESYQGSTNTRQNLELAFGYSVTRLGLGLVPAAC 427
Query: 427 AVFALLVTSTLKLQDTNPR 445
++ + ++ T+ L DT R
Sbjct: 428 SLLSAIIAYTMDLPDTRRR 446
>Os06g0628200
Length = 180
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 105/148 (70%), Gaps = 8/148 (5%)
Query: 287 IPAIIFCCSFLVSVVLQEIKWNSRRLKSLLTIGAILWVIAGAAVFVLPSQMHNLMYPLAM 346
I AIIFCCSFL+S VLQEIKWNSRRLKSLLTIGAILWVIAGAAVFVLPSQMHNL+YPLA+
Sbjct: 15 IYAIIFCCSFLISDVLQEIKWNSRRLKSLLTIGAILWVIAGAAVFVLPSQMHNLIYPLAV 74
Query: 347 VIGAANALVMVTTIGLESALVGDDLNGCAFVYGSL-----SFLDKMSCGIALFVLESYED 401
VIGAAN LVMV + + + G L L + S GIALFVLESYE
Sbjct: 75 VIGAANTLVMVRRLDADHNWARERAGGRRPERLHLRLRLAELLGQDSSGIALFVLESYE- 133
Query: 402 SISCGETRGLYTVSRFGTGLIPSCFAVF 429
+ R ++ +RF TGLIPSCFAVF
Sbjct: 134 --AAARRRIVHDENRFVTGLIPSCFAVF 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.139 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,036,189
Number of extensions: 484503
Number of successful extensions: 1225
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1221
Number of HSP's successfully gapped: 3
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 158 (65.5 bits)