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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0168000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.0471) R2 : 0.309
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.44 (0.113) R2dC : 0.229 R2C : 0.18
β3 : 1.5 (0.172) R2dE : 0.145 R2E : 0.0818
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0999 (0.111) R2dN8 : -0.000419 R2N8 : -0.0213
σ : 0.851
deviance : 334.21
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_____
C
peak time of C : 21.5
E
wheather : radiation
threshold : 5.014
memory length : 29459
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
319.06 0.839 3.63 0.0107 1.21 1.81 0.809 3.38 -0.0971 22 1.312 21685 -- --
326.05 0.841 3.58 0.593 1.44 1.59 0.888 -- -0.106 21.5 3.496 28107 -- --
321.36 0.835 3.63 0.0192 1.22 1.79 -- 3.22 -0.0934 22 1.584 21700 -- --
326.68 0.842 3.55 0.516 1.46 1.71 -- -- -0.0179 21.6 3.645 29552 -- --
388.81 0.923 3.58 -0.0339 -- 0.841 -- 0.543 -0.434 -- 1.837 21874 -- --
374.12 0.907 3.61 -0.0275 1.23 -- 0.844 -- -0.445 22 -- -- -- --
376.89 0.909 3.61 -0.0607 1.23 -- -- -- -0.448 22 -- -- -- --
390.46 0.924 3.57 -0.0425 -- 0.849 -- -- -0.419 -- 3.15 21869 -- --
334.21 0.851 3.53 -- 1.44 1.5 -- -- 0.0999 21.5 5.014 29459 -- --
467.72 1.01 3.58 -0.0454 -- -- -- -- -0.447 -- -- -- -- --
376.99 0.908 3.61 -- 1.23 -- -- -- -0.441 22 -- -- -- --
390.51 0.923 3.57 -- -- 0.849 -- -- -0.414 -- 3.15 21869 -- --
467.78 1.01 3.58 -- -- -- -- -- -0.441 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.97 humidity 70.0 43200 > th dose dependent rect. 13 2
6 317.29 humidity 80.0 43200 > th dose independent rect. 14 2
7 317.46 humidity 80.0 43200 < th dose independent rect. 14 2
32 318.24 precipitation 0.1 43200 > th dose independent rect. 13 1
34 318.25 precipitation 0.1 43200 < th dose independent rect. 13 1
35 318.25 precipitation 0.1 43200 < th dose dependent rect. 13 1
43 318.52 humidity 80.0 43200 > th dose independent rect. 11 8
59 318.79 humidity 80.0 43200 < th dose independent rect. 10 8
69 318.87 precipitation 0.1 43200 > th dose dependent rect. 13 1
160 319.75 humidity 80.0 43200 > th dose dependent sin 21 NA
189 319.97 temperature 10.0 43200 > th dose dependent rect. 15 1
202 320.05 humidity 80.0 43200 > th dose independent sin 23 NA
271 320.33 temperature 30.0 43200 < th dose dependent rect. 15 1
308 320.45 humidity 80.0 43200 < th dose independent sin 22 NA
323 320.48 humidity 80.0 43200 > th dose dependent rect. 4 15
347 320.54 humidity 90.0 43200 < th dose independent sin 20 NA
392 320.64 humidity 90.0 43200 > th dose independent sin 19 NA
394 320.64 radiation 1.0 43200 < th dose independent rect. 7 22
404 320.66 radiation 1.0 43200 > th dose independent rect. 7 22
411 320.67 radiation 1.0 43200 < th dose independent rect. 9 12
413 320.67 humidity 90.0 43200 > th dose independent rect. 12 14
414 320.67 radiation 1.0 43200 < th dose independent rect. 9 14
420 320.68 radiation 1.0 43200 < th dose independent rect. 9 10
424 320.68 radiation 1.0 43200 < th dose independent rect. 7 14
439 320.69 radiation 1.0 43200 < th dose independent rect. 7 12
446 320.69 humidity 90.0 43200 < th dose independent rect. 12 17
456 320.70 radiation 1.0 43200 > th dose independent rect. 7 12
478 320.71 radiation 1.0 43200 < th dose independent sin 19 NA
503 320.73 radiation 1.0 43200 < th dose independent rect. 12 9
518 320.74 radiation 1.0 43200 < th dose independent rect. 12 7
559 320.76 humidity 80.0 43200 > th dose dependent rect. 18 1
602 320.79 radiation 1.0 43200 > th dose independent sin 18 NA
608 320.79 humidity 90.0 43200 > th dose independent rect. 4 18
629 320.82 humidity 90.0 43200 > th dose independent rect. 20 1
658 320.84 radiation 1.0 43200 > th dose independent rect. 12 7
689 320.85 humidity 90.0 43200 < th dose independent rect. 24 22
718 320.87 humidity 90.0 43200 < th dose independent rect. 4 18
735 320.89 humidity 90.0 43200 < th dose dependent rect. 15 1
766 320.92 radiation 1.0 43200 < th dose dependent rect. 13 14
772 320.93 radiation 1.0 43200 < th dose dependent rect. 13 11
781 320.94 radiation 1.0 43200 < th dose dependent sin 17 NA
785 320.94 radiation 1.0 43200 < th dose dependent rect. 13 8
808 320.95 radiation 1.0 43200 < th dose dependent rect. 13 6
835 320.96 humidity 90.0 43200 < th dose independent rect. 6 16
845 320.96 radiation 1.0 43200 < th dose dependent rect. 15 6
901 320.99 radiation 1.0 43200 < th dose independent rect. 17 23
905 320.99 humidity 90.0 43200 > th dose dependent rect. 20 1
971 321.03 humidity 90.0 43200 > th dose independent rect. 1 21
972 321.03 humidity 90.0 43200 > th dose independent rect. 4 22
988 321.04 radiation 1.0 43200 > th dose independent rect. 17 23