Os07g0578200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0578200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.15 | 0.286 | 11 | -0.608 | 1.77 | -1.91 | 0.801 | 0.142 | -0.0705 | 7.81 | 17.58 | 159 | -- | -- |
| 37.15 | 0.284 | 11.1 | -0.636 | 1.77 | -1.88 | 0.798 | -- | -0.0775 | 7.82 | 17.9 | 157 | -- | -- |
| 38.97 | 0.291 | 11 | -0.594 | 1.76 | -1.9 | -- | 0.0995 | -0.07 | 7.82 | 17.9 | 162 | -- | -- |
| 38.97 | 0.291 | 11.1 | -0.609 | 1.75 | -1.9 | -- | -- | -0.0751 | 7.81 | 17.9 | 165 | -- | -- |
| 130.64 | 0.532 | 11.1 | -0.404 | -- | -2.84 | -- | 1.78 | -0.0681 | -- | 24.1 | 488 | -- | -- |
| 85.59 | 0.434 | 11.1 | -1.07 | 2.15 | -- | 1.17 | -- | -0.38 | 6.8 | -- | -- | -- | -- |
| 89.1 | 0.442 | 11.1 | -1.05 | 2.16 | -- | -- | -- | -0.383 | 6.79 | -- | -- | -- | -- |
| 131.74 | 0.535 | 11.1 | -0.509 | -- | -2.64 | -- | -- | -0.0477 | -- | 23.84 | 483 | -- | -- |
| 47.68 | 0.322 | 11 | -- | 1.71 | -2.23 | -- | -- | 0.0242 | 7.99 | 17.04 | 168 | -- | -- |
| 332.25 | 0.852 | 11.2 | -1 | -- | -- | -- | -- | -0.341 | -- | -- | -- | -- | -- |
| 118.24 | 0.509 | 11.1 | -- | 2.14 | -- | -- | -- | -0.266 | 6.82 | -- | -- | -- | -- |
| 137.97 | 0.547 | 11.1 | -- | -- | -2.73 | -- | -- | 0.0447 | -- | 23.57 | 489 | -- | -- |
| 358.82 | 0.884 | 11.1 | -- | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 4 | 38.31 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 9 | 38.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 10 | 38.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 13 | 38.63 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 19 | 38.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 26 | 39.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 53 | 40.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 59 | 40.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 68 | 40.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 122 | 41.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 144 | 42.00 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 146 | 42.02 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 153 | 42.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 159 | 42.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 177 | 42.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 179 | 42.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 280 | 42.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 298 | 42.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 17 |
| 322 | 42.72 | temperature | 15 | 4320 | > th | dose dependent | rect. | 7 | 18 |
| 339 | 42.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 373 | 42.81 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 17 |
| 412 | 42.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 526 | 43.00 | temperature | 15 | 4320 | > th | dose dependent | sin | 17 | NA |
| 602 | 43.09 | temperature | 15 | 1440 | > th | dose dependent | sin | 5 | NA |
| 664 | 43.15 | temperature | 30 | 4320 | < th | dose dependent | sin | 17 | NA |
| 998 | 43.41 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |