BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0160200 Os03g0160200|AK064836
         (186 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0160200  Conserved hypothetical protein                      203   6e-53
Os10g0423000  Conserved hypothetical protein                      113   1e-25

>Os03g0160200 Conserved hypothetical protein
          Length = 186

 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 115/186 (61%)

Query: 1   MAALVIXXXXXXXXXXXXXXXKPSSHFASPQSMRGFNAVNCRAFHXXXXXXXXXXXXXXX 60
           MAALVI               KPSSHFASPQSMRGFNAVNCRAFH               
Sbjct: 1   MAALVISKQRSHQQQSSDRRRKPSSHFASPQSMRGFNAVNCRAFHSSVSIGILPSPPPPP 60

Query: 61  XXXXXXXXXKTPKSQPHHGKKXXXXXXXXXXXXXXXXXELWAGPAFXXXXXXXXXXXXXX 120
                    KTPKSQPHHGKK                 ELWAGPAF              
Sbjct: 61  ARTYSSPEPKTPKSQPHHGKKRSRAISISPSTSPPSRPELWAGPAFSNSPPPSSLPIPKF 120

Query: 121 XLHQKRSVSLELPPAGRSDDVVVPLHAKSAPSSPTAGSGVSFFSDSDTAIATENLRRILH 180
            LHQKRSVSLELPPAGRSDDVVVPLHAKSAPSSPTAGSGVSFFSDSDTAIATENLRRILH
Sbjct: 121 SLHQKRSVSLELPPAGRSDDVVVPLHAKSAPSSPTAGSGVSFFSDSDTAIATENLRRILH 180

Query: 181 LKIADH 186
           LKIADH
Sbjct: 181 LKIADH 186



>Os10g0423000 Conserved hypothetical protein
          Length = 191

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 26  HFASPQSMRGFNAVNCRAFHXXXXXXXXXXXXXXXXXXXXXXXXKTPKSQP---HHGKKX 82
           HF+SP S  GF  +NCR+FH                        KTPK Q      G K 
Sbjct: 28  HFSSPPSSHGFRGMNCRSFHSGVCAGLLPSPPPPPARTYSSPEPKTPKQQQQLQRRGGKR 87

Query: 83  XXXXXXXXXXXXXXXXELWAGPAFXXXXXXXXXXXXXXXLHQKRSVSLELPPAGRSDDVV 142
                           ELWAGPAF               L Q RS+SLELP   RSD+V 
Sbjct: 88  SRPISISPSTSPPSRPELWAGPAFSNSPPPSSLPIPKFSLRQNRSISLELPLFERSDEVE 147

Query: 143 VPLHAKSAPSSPTAGSGVSFFSDSDTAIATENLRRILHLKIADH 186
           V  HAKSAPSSP  GSG  FF+D++TA+ATENLRRILHL I+DH
Sbjct: 148 VKPHAKSAPSSPVGGSGFDFFNDNETAVATENLRRILHLDISDH 191



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,388,498
Number of extensions: 129993
Number of successful extensions: 436
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)