BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0159900 Os03g0159900|AK120519
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0159900 Conserved hypothetical protein 272 9e-74
Os07g0173100 HSP20-like chaperone domain containing protein 77 5e-15
Os10g0430950 Conserved hypothetical protein 68 3e-12
>Os03g0159900 Conserved hypothetical protein
Length = 160
Score = 272 bits (695), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 138/160 (86%), Positives = 138/160 (86%)
Query: 1 MRIHPSPATTAGGSCGGKKDLRRLPHVYSKVLELPFPADTDVAVFEGPDAFHFVVSAAAA 60
MRIHPSPATTAGGSCGGKKDLRRLPHVYSKVLELPFPADTDVAVFEGPDAFHFVVSAAAA
Sbjct: 1 MRIHPSPATTAGGSCGGKKDLRRLPHVYSKVLELPFPADTDVAVFEGPDAFHFVVSAAAA 60
Query: 61 LAGEVRVRTVRIHPXXXXXXXXXXXXXXXXXXXXXXMELDKWRSRLPEASCPAMAVAGYV 120
LAGEVRVRTVRIHP MELDKWRSRLPEASCPAMAVAGYV
Sbjct: 61 LAGEVRVRTVRIHPGVVRVVVQAGGGGVHDDGDDDDMELDKWRSRLPEASCPAMAVAGYV 120
Query: 121 NGQLVVTVPKGRGGGEVQGRAVSYAVFQTAFLEAKGRKLL 160
NGQLVVTVPKGRGGGEVQGRAVSYAVFQTAFLEAKGRKLL
Sbjct: 121 NGQLVVTVPKGRGGGEVQGRAVSYAVFQTAFLEAKGRKLL 160
>Os07g0173100 HSP20-like chaperone domain containing protein
Length = 171
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 1 MRIHPSP------------ATTAGGSCGGKKDLRRLPHVYSKVLELPFPADTDVAVFEGP 48
MR+HP+P A G K LRRLPH+++KVLELPF AD DV+V E
Sbjct: 1 MRVHPAPRKRTIAVQRRCGVAAAAAGMAGGKKLRRLPHIFAKVLELPFAADADVSVEEDA 60
Query: 49 DAFHFVVSAAAAL-AGEVRVRTVRIHPXXXXXXXXXXXXXXXXXXXXXXMELDKWRSRLP 107
A FV +A +G V IHP ELD+WR RLP
Sbjct: 61 AALRFVAAADGFTPSGGASAHAVEIHP-GVTKVVVRDLSAGLDGDDGAVFELDRWRFRLP 119
Query: 108 EASCPAMAVAGYVNGQLVVTVPK 130
+ PAMA A Y +G+LVVTVPK
Sbjct: 120 PCTLPAMATATYADGELVVTVPK 142
>Os10g0430950 Conserved hypothetical protein
Length = 168
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 19 KDLRRLPHVYSKVLELPFPADTDV-AVFEGPDAFHFVVSAAAALAGEVRVRTVRIHPXXX 77
K L+RLP V+S+VLELPFP DT+V +F FV V+V VR+
Sbjct: 15 KKLQRLPPVFSRVLELPFPRDTNVRKLFTTNADLFFVPHGVGGEPDVVKVHIVRLE--RW 72
Query: 78 XXXXXXXXXXXXXXXXXXXMELDKWRSRLPEASCPAMAVAGYVNGQLVVTVPK----GRG 133
+ DKWR L E S +M +AGYVNGQL+V VP+ G G
Sbjct: 73 DMTRVVVHIGPGEPDLRNDLVYDKWRFPLAETSILSMVMAGYVNGQLIVVVPRMDASGDG 132
Query: 134 GGE 136
G E
Sbjct: 133 GNE 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,410,040
Number of extensions: 202923
Number of successful extensions: 600
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)