BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0159600 Os03g0159600|AK106743
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0159600 Similar to Rab28 protein 354 5e-98
Os09g0463400 158 4e-39
Os06g0341300 Seed maturation protein domain containing protein 129 3e-30
Os12g0470100 88 7e-18
Os03g0747400 Seed maturation protein domain containing protein 85 7e-17
>Os03g0159600 Similar to Rab28 protein
Length = 276
Score = 354 bits (908), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 195/276 (70%), Positives = 195/276 (70%)
Query: 1 MSQEQPRRPSEKAAXXXXXXXXXXXXDVFPVTGSLAAKPIAPRDAATMQSAENLVLGKTV 60
MSQEQPRRPSEKAA DVFPVTGSLAAKPIAPRDAATMQSAENLVLGKTV
Sbjct: 1 MSQEQPRRPSEKAAGGGGGEQGIRYGDVFPVTGSLAAKPIAPRDAATMQSAENLVLGKTV 60
Query: 61 KGGPAAAMESAASRNEEMGVVGHDQATDAAAEQGVNVSDTLVPGGGRIVTEFVAGQAVGH 120
KGGPAAAMESAASRNEEMGVVGHDQATDAAAEQGVNVSDTLVPGGGRIVTEFVAGQAVGH
Sbjct: 61 KGGPAAAMESAASRNEEMGVVGHDQATDAAAEQGVNVSDTLVPGGGRIVTEFVAGQAVGH 120
Query: 121 YVEQDDXXXXXXXXXXXXXXXXXXEEPAKITIXXXXXXXXXXXXXTPVERSDXXXXXXXX 180
YVEQDD EEPAKITI TPVERSD
Sbjct: 121 YVEQDDGAAVVAGVVGAAPGAVRVEEPAKITIGEALEAAALAAGGTPVERSDAAAIQAAE 180
Query: 181 XXXTGTDTYMPGGLXXXXXXXXXXNLWTARDADKTKLGDVLSNATAKLAADKEVESGDAA 240
TGTDTYMPGGL NLWTARDADKTKLGDVLSNATAKLAADKEVESGDAA
Sbjct: 181 AKATGTDTYMPGGLAAQAQSAAVANLWTARDADKTKLGDVLSNATAKLAADKEVESGDAA 240
Query: 241 RVAGAEMRNKPXXXXXXXXXXXXXXXXXRLNRGPTT 276
RVAGAEMRNKP RLNRGPTT
Sbjct: 241 RVAGAEMRNKPGAAARPGGVAASMAAAARLNRGPTT 276
>Os09g0463400
Length = 99
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/87 (88%), Positives = 81/87 (93%)
Query: 27 DVFPVTGSLAAKPIAPRDAATMQSAENLVLGKTVKGGPAAAMESAASRNEEMGVVGHDQA 86
DVFP+T SLAAKPI P DAATMQSAENLVLGKTVKGGPAAAMESA SRNEEMGV+GHDQ+
Sbjct: 10 DVFPLTRSLAAKPIVPWDAATMQSAENLVLGKTVKGGPAAAMESATSRNEEMGVIGHDQS 69
Query: 87 TDAAAEQGVNVSDTLVPGGGRIVTEFV 113
TDA AE GVN+SDTLVPGGGRIVTEFV
Sbjct: 70 TDATAEHGVNISDTLVPGGGRIVTEFV 96
>Os06g0341300 Seed maturation protein domain containing protein
Length = 277
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 123/251 (49%), Gaps = 22/251 (8%)
Query: 28 VFPVTGSLAAKPIAPRDAATMQSAENLVLG----KTVKGGPAA--AMESAASRNEEMGVV 81
VF VTG LA +PIAPRDAA M+SAE V G + + GG +A AME+AA+ N+ + V
Sbjct: 33 VFAVTGELAGQPIAPRDAAAMRSAEESVPGVPVPQDIGGGYSAGVAMETAAAYNQAVAAV 92
Query: 82 GHDQATDAAAEQGVNVSDTLVPGGGRIVTEFVAGQAVGHYVEQDDXXXXXXXXXXXXXXX 141
QA+DAA QG+ V+ T VPGG RI+TEFVAGQ VG Y D
Sbjct: 93 RPGQASDAATNQGIAVTQTSVPGG-RIITEFVAGQVVGQYSVAD---------------Q 136
Query: 142 XXXEEPAKITIXXXXXXXXXXXXXTPVERSDXXXXXXXXXXXTGTDTYMPGGLXXXXXXX 201
++ KIT+ PV+R+D G+D MPGGL
Sbjct: 137 AVEQDATKITVGEALEATALAAGERPVDRTDVEAIRAAEMAAQGSDVTMPGGLADQAQAA 196
Query: 202 XXXNLWTARDADKTKLGDVLSNATAKLAADKEVESGDAARVAGAEMRNKPXXXXXXXXXX 261
N RD DK +GDVL++ATAKLA DK + DAA+V AE +
Sbjct: 197 ARSNADADRDDDKITVGDVLTDATAKLAGDKVAGAEDAAKVVQAETYSDAAARTRAGGVG 256
Query: 262 XXXXXXXRLNR 272
RLN+
Sbjct: 257 AAVSTAARLNQ 267
>Os12g0470100
Length = 61
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 45/49 (91%)
Query: 68 MESAASRNEEMGVVGHDQATDAAAEQGVNVSDTLVPGGGRIVTEFVAGQ 116
MESAASRNEEMGV+GHDQ+TDA AE GVNVS+TLV GG RIVTEFVAGQ
Sbjct: 1 MESAASRNEEMGVIGHDQSTDATAEHGVNVSNTLVLGGSRIVTEFVAGQ 49
>Os03g0747400 Seed maturation protein domain containing protein
Length = 257
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 77/123 (62%), Gaps = 7/123 (5%)
Query: 1 MSQEQPRRPSEKAAXXXXXXXXXXXXDVFPVTGSLAAKPIAPRDAATMQSAENLVLGKTV 60
MSQ QPRRP + DVF V+G LA +P+APRDAA +QSAE VLG+
Sbjct: 1 MSQGQPRRPPPDGSGARPVMYG----DVFDVSGELAGQPVAPRDAAKLQSAEEAVLGEAQ 56
Query: 61 KGGPAAAMESAASRNEEMGVVGHDQATDAAAEQG--VNVSDTLVPGGGRIVTEFVAGQAV 118
KGGPAAAM+SAA+ N G VG Q T A A++G V V++T +P G R+VTE VAGQ V
Sbjct: 57 KGGPAAAMQSAAAINARAGHVGRAQVTGAIADEGVAVAVAETELP-GRRVVTESVAGQVV 115
Query: 119 GHY 121
Sbjct: 116 ARL 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.125 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,431,836
Number of extensions: 205052
Number of successful extensions: 551
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 5
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 155 (64.3 bits)