Os03g0159600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rab28 protein.
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Os03g0159600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rab28 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.87 | 0.768 | 3.28 | 0.441 | 0.299 | -2.67 | -1.18 | -5.11 | 0.099 | 18.6 | 19.6 | 7310 | -- | -- |
| 303.12 | 0.811 | 3.08 | 0.697 | 0.134 | -1.87 | -0.981 | -- | 0.232 | 18.7 | 17.9 | 2778 | -- | -- |
| 266.51 | 0.76 | 3.33 | 0.528 | 0.308 | -3.07 | -- | -5.78 | 0.0566 | 19.4 | 18.9 | 7363 | -- | -- |
| 284.61 | 0.786 | 3.06 | 0.507 | 0.316 | -1.01 | -- | -- | 0.198 | 19.8 | 21.5 | 3144 | -- | -- |
| 271 | 0.767 | 3.31 | 0.619 | -- | -3.29 | -- | -6.25 | 0.109 | -- | 18.99 | 7320 | -- | -- |
| 309.65 | 0.825 | 3.15 | -0.106 | 0.305 | -- | -1.23 | -- | -0.161 | 18.4 | -- | -- | -- | -- |
| 312.86 | 0.828 | 3.16 | -0.0931 | 0.312 | -- | -- | -- | -0.167 | 19.6 | -- | -- | -- | -- |
| 289.64 | 0.793 | 3.07 | 0.452 | -- | -1.01 | -- | -- | 0.182 | -- | 21.5 | 3037 | -- | -- |
| 286.96 | 0.789 | 3.09 | -- | 0.308 | -0.824 | -- | -- | 0.124 | 19.8 | 22.37 | 2955 | -- | -- |
| 318.09 | 0.833 | 3.15 | -0.0975 | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
| 313.09 | 0.828 | 3.15 | -- | 0.313 | -- | -- | -- | -0.156 | 19.6 | -- | -- | -- | -- |
| 291.83 | 0.796 | 3.09 | -- | -- | -0.814 | -- | -- | 0.107 | -- | 22.34 | 2942 | -- | -- |
| 318.34 | 0.833 | 3.15 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 265.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 13 | 269.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 10 |
| 20 | 269.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 22 | 269.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 23 | 269.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 27 | 269.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 53 | 269.60 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 62 | 269.66 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 5 |
| 208 | 270.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 274 | 271.23 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 305 | 271.43 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 313 | 271.46 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 325 | 271.55 | temperature | 20 | 4320 | > th | dose independent | sin | 11 | NA |
| 338 | 271.61 | temperature | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 490 | 272.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 553 | 272.61 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 567 | 272.65 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 676 | 273.04 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 690 | 273.08 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 755 | 273.32 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 764 | 273.33 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 777 | 273.36 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 863 | 273.52 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 22 | NA |
| 993 | 273.77 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 23 | NA |