Os03g0747400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Seed maturation protein domain containing protein.
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Os03g0747400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Seed maturation protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.64 | 0.445 | 6.48 | -0.181 | 0.787 | 0.685 | 0.122 | -0.647 | -0.174 | 19.3 | 22.94 | 587 | -- | -- |
| 89.63 | 0.441 | 6.49 | -0.25 | 0.786 | 0.929 | 0.284 | -- | -0.198 | 19.1 | 21.96 | 424 | -- | -- |
| 89.62 | 0.441 | 6.48 | -0.187 | 0.788 | 0.707 | -- | -0.622 | -0.179 | 19.2 | 22.75 | 544 | -- | -- |
| 89.85 | 0.441 | 6.49 | -0.258 | 0.789 | 0.925 | -- | -- | -0.198 | 19.1 | 22 | 425 | -- | -- |
| 121.11 | 0.513 | 6.47 | -0.285 | -- | 0.576 | -- | -0.612 | -0.224 | -- | 21.4 | 337 | -- | -- |
| 97.72 | 0.463 | 6.51 | -0.454 | 0.727 | -- | 0.302 | -- | -0.308 | 19.1 | -- | -- | -- | -- |
| 97.96 | 0.463 | 6.51 | -0.46 | 0.728 | -- | -- | -- | -0.307 | 19.1 | -- | -- | -- | -- |
| 121.44 | 0.513 | 6.48 | -0.324 | -- | 0.743 | -- | -- | -0.25 | -- | 21.4 | 311 | -- | -- |
| 91.35 | 0.445 | 6.48 | -- | 0.803 | 1.07 | -- | -- | -0.157 | 19.1 | 21.95 | 440 | -- | -- |
| 125.89 | 0.524 | 6.5 | -0.474 | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
| 103.54 | 0.476 | 6.5 | -- | 0.733 | -- | -- | -- | -0.256 | 19.1 | -- | -- | -- | -- |
| 123.83 | 0.518 | 6.47 | -- | -- | 0.982 | -- | -- | -0.206 | -- | 21 | 332 | -- | -- |
| 131.82 | 0.536 | 6.48 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 3 | 85.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 11 | 85.95 | temperature | 25 | 270 | < th | dose dependent | sin | 6 | NA |
| 47 | 87.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 52 | 87.28 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 71 | 87.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 141 | 88.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 145 | 88.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 155 | 88.12 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 12 |
| 161 | 88.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 165 | 88.16 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 207 | 88.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 228 | 88.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 231 | 88.43 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 237 | 88.46 | temperature | 20 | 270 | < th | dose independent | sin | 5 | NA |
| 253 | 88.53 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 11 |
| 359 | 89.01 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 407 | 89.18 | temperature | 20 | 270 | > th | dose independent | sin | 4 | NA |
| 421 | 89.22 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 453 | 89.36 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 516 | 89.51 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 522 | 89.52 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 549 | 89.58 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 583 | 89.68 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |
| 587 | 89.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 627 | 89.76 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 1 |
| 679 | 89.86 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 701 | 89.90 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 708 | 89.91 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 719 | 89.94 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 720 | 89.94 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 727 | 89.97 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 775 | 90.06 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 6 |
| 846 | 90.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 861 | 90.18 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 862 | 90.18 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 874 | 90.19 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 22 |
| 907 | 90.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 936 | 90.27 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 945 | 90.28 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 958 | 90.30 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 959 | 90.30 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 987 | 90.35 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 6 | 5 |