BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0747400 Os03g0747400|Os03g0747400
(257 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22490.1 | chr3:7969785-7970738 REVERSE LENGTH=263 175 2e-44
AT3G22500.1 | chr3:7971920-7972865 REVERSE LENGTH=257 172 2e-43
AT1G03120.1 | chr1:752271-753140 FORWARD LENGTH=183 81 7e-16
AT5G27980.1 | chr5:10015883-10016676 REVERSE LENGTH=193 78 6e-15
AT5G53260.1 | chr5:21604662-21605674 REVERSE LENGTH=177 48 6e-06
AT5G53270.1 | chr5:21606271-21606750 REVERSE LENGTH=160 48 6e-06
>AT3G22490.1 | chr3:7969785-7970738 REVERSE LENGTH=263
Length = 262
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 145/268 (54%), Gaps = 28/268 (10%)
Query: 1 MSQG-QPRRPPPDGSGARPVMYGDVFDVSGELAGQPVAPRDAAKLQSAEEAVLGEAQKGG 59
MSQ QP+RP PV YGDVF+VSGELA +P+AP DA +Q+AE V G QKGG
Sbjct: 1 MSQEEQPKRPQ------EPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGG 54
Query: 60 PXXXXXXXXXXXXXXGHVGRAQVTGAIADEGVAVAVAETELPGRRVVTESVAGQVVARLA 119
G V T A+ GV VA +T++PG RV TE V GQVV +
Sbjct: 55 AAAVMQSAATANKRGGFVHPGDTTDLAAERGVTVA--QTDVPGARVTTEFVGGQVVGQY- 111
Query: 120 TPPRVVATQPS------GSLDKDAVTIGRALEWX-----------XXXXXXXAAEMLATG 162
PR VAT + G + A+TIG ALE AAE+ A G
Sbjct: 112 VEPRPVATAAAMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACG 171
Query: 163 RTVTVPGGVXXXXXXXXXXXXXXXXRDEDRIKLRDVLTGARGKLPADKAATREDAERVPS 222
V PGG+ RDED+IKL DVL GA GKL ADKA TR+DAE V S
Sbjct: 172 TNVIAPGGIAASAQSAANHNATID-RDEDKIKLIDVLAGATGKLAADKAVTRQDAEGVVS 230
Query: 223 AEVRNRPDMATTPGGVADAVTAAARLNQ 250
AE+RN P+++T PGGVA ++TAAARLN+
Sbjct: 231 AELRNNPNLSTHPGGVAASITAAARLNE 258
>AT3G22500.1 | chr3:7971920-7972865 REVERSE LENGTH=257
Length = 256
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 139/265 (52%), Gaps = 28/265 (10%)
Query: 1 MSQGQPRRPPPDGSGARPVMYGDVFDVSGELAGQPVAPRDAAKLQSAEEAVLGEAQKGGP 60
MSQ QPRRP PV YGDVF+VSGELA +P+AP DA +QSAE V G QKGGP
Sbjct: 1 MSQEQPRRPR------EPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGP 54
Query: 61 XXXXXXXXXXXXXXGHVGRAQVTGAIADEGVAVAVAETELPGRRVVTESVAGQVVARLAT 120
G V T +A+ G V E +P V TE V GQVV +
Sbjct: 55 AAVMQSAATTNIRGGFVHPDDKTELVAERGATV---EQTVPAATVTTEFVGGQVVGQHVE 111
Query: 121 PPRVVATQPSGSLDKDA----VTIGRALEWXXXXX-----------XXXAAEMLATGRTV 165
P RVVA + D++A +TIG ALE AAEM A+G V
Sbjct: 112 PRRVVA---AARTDEEALQSTITIGEALEATVKTAGNKPVDQSDAAAIQAAEMRASGTNV 168
Query: 166 TVPGGVXXXXXXXXXXXXXXXXRDEDRIKLRDVLTGARGKLPADKAATREDAERVPSAEV 225
GV RDE +IKLRDVLTGA GKL AD+A TREDAE V SAE+
Sbjct: 169 IALAGVAASAQSAADHNATVD-RDERKIKLRDVLTGAAGKLSADRAVTREDAEGVVSAEM 227
Query: 226 RNRPDMATTPGGVADAVTAAARLNQ 250
RN P + T PGGVA ++T AARLN+
Sbjct: 228 RNNPKLCTHPGGVAASLTVAARLNE 252
>AT1G03120.1 | chr1:752271-753140 FORWARD LENGTH=183
Length = 182
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 109 SVAGQVVAR-----LATPPRVVATQPSGSLDKDAVTIGRALEWXXXX-----------XX 152
SV+G VAR + P VAT GS+D VTIG ALE
Sbjct: 28 SVSGDDVARKQGDSFSQPDPTVATM--GSVD--TVTIGEALEATALSLGDKPVDRRDAAA 83
Query: 153 XXAAEMLATGRTVTVPGGVXXXXXXXXXXXXXXXXRDEDRIKLRDVLTGARGKLPADKAA 212
AAE ATG + PGG+ +ED++ + D+LT A +LP DK
Sbjct: 84 IQAAETRATGESKGRPGGLAVAAQAAATTNEQTVS-EEDKVNIADILTDAAERLPGDKVV 142
Query: 213 TREDAERVPSAEVRNRPDMATTPGGVADAVTAAARLNQE 251
T EDAE V AE+R+ +M TTPGGVAD+++A ARLNQ+
Sbjct: 143 TSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGARLNQQ 181
>AT5G27980.1 | chr5:10015883-10016676 REVERSE LENGTH=193
Length = 192
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 69/127 (54%), Gaps = 14/127 (11%)
Query: 138 VTIGRALE------------WXXXXXXXXAAEMLATGRTVTVPGGVXXXXXXXXXXXXXX 185
+TIG ALE W AAE+ ATGRT +PGGV
Sbjct: 68 ITIGEALEAAVLTAGNKPVEWSDAAAIQ-AAEVRATGRTNIMPGGVAASAQSAATLNARI 126
Query: 186 XXRDEDRIKLRDVLTGARGKLPADKAATREDAERVPSAEVRNRPDMATTPGGVADAVTAA 245
D+ + L DVLTGA KLP+DKAATR+DAE V AE+RN P + T P GVA +V AA
Sbjct: 127 GS-DDTKTTLADVLTGASSKLPSDKAATRKDAEGVTGAEMRNDPHLTTYPTGVAASVAAA 185
Query: 246 ARLNQER 252
AR+NQ +
Sbjct: 186 ARINQSK 192
>AT5G53260.1 | chr5:21604662-21605674 REVERSE LENGTH=177
Length = 176
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 188 RDEDRIKLRDVLTGARGKLPADKAATREDAERVPSAEVRNRPDMATTPGGVADAVTAAAR 247
+D ++ L DV+ K+ D+ T EDAE V AE+ + P PGGVA++V AA +
Sbjct: 109 KDNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNHSPFNNIIPGGVAESVAAAYK 168
Query: 248 LNQE 251
LN +
Sbjct: 169 LNHD 172
>AT5G53270.1 | chr5:21606271-21606750 REVERSE LENGTH=160
Length = 159
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 189 DEDRIKLRDVLTGARGKLPADKAATREDAERVPSAEVRNRPDMATTPGGVADAVTAAARL 248
D ++ L DV+ K+ D+ T EDAE V AE+ + P PGGVA++VTAA +L
Sbjct: 91 DNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNHSPFNNIIPGGVAESVTAAYKL 150
Query: 249 N 249
N
Sbjct: 151 N 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,338,120
Number of extensions: 141318
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 6
Length of query: 257
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 161
Effective length of database: 8,474,633
Effective search space: 1364415913
Effective search space used: 1364415913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)