BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0158600 Os03g0158600|Os03g0158600
         (210 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0158600  Polynucleotidyl transferase, Ribonuclease H fo...   356   8e-99
Os06g0683500  Ribonuclease H domain containing protein            213   6e-56
Os01g0165900                                                       88   4e-18

>Os03g0158600 Polynucleotidyl transferase, Ribonuclease H fold domain containing
           protein
          Length = 210

 Score =  356 bits (913), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 181/210 (86%), Positives = 181/210 (86%)

Query: 1   MDPCAMPRVYRPDLGVLRPCNPILACGLVAGEVGXXXXXXXXXXXXXXKPEVGWMKLNFD 60
           MDPCAMPRVYRPDLGVLRPCNPILACGLVAGEVG              KPEVGWMKLNFD
Sbjct: 1   MDPCAMPRVYRPDLGVLRPCNPILACGLVAGEVGRWTSSSSSERTTWRKPEVGWMKLNFD 60

Query: 61  GSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTXXXXXXXXXXXXXXXYGWRR 120
           GSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFT               YGWRR
Sbjct: 61  GSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTAELAALRRGLELAARYGWRR 120

Query: 121 VWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSHLCRDENKVAHGFAK 180
           VWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSHLCRDENKVAHGFAK
Sbjct: 121 VWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSHLCRDENKVAHGFAK 180

Query: 181 LGHKARRRRVWHVVPPNEVLVFLQRDADRG 210
           LGHKARRRRVWHVVPPNEVLVFLQRDADRG
Sbjct: 181 LGHKARRRRVWHVVPPNEVLVFLQRDADRG 210



>Os06g0683500 Ribonuclease H domain containing protein
          Length = 240

 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 137/208 (65%), Gaps = 5/208 (2%)

Query: 6   MPRVYRPDLGVLRPCNPILACGLVAG---EVGXXXXXXXXXXXXXXKPEVGWMKLNFDGS 62
           M RV+R DLGVLR  NP+L C LV G    +               KPE GWMKLNFDGS
Sbjct: 35  MLRVHRADLGVLRRRNPVLGCILVGGGGRRILRLRAYSSASARIWRKPEEGWMKLNFDGS 94

Query: 63  RNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTXXXXXXXXXXXXXXXYGWRRVW 122
              +TG ASIGG +RDH+GAF+ GYAER  +G A+S                  GWRRVW
Sbjct: 95  SKHSTGIASIGGVYRDHDGAFLLGYAER--IGTATSSVAELAALRRGLELAVRNGWRRVW 152

Query: 123 AEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSHLCRDENKVAHGFAKLG 182
           AEGDS+AVVDVV  RA V+SEED R C EIAALLP LD +AVSH+ R  NKVAHGFA+LG
Sbjct: 153 AEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAVSHVRRGGNKVAHGFAELG 212

Query: 183 HKARRRRVWHVVPPNEVLVFLQRDADRG 210
           H+A R RVW   PP+EVL FL+RDADRG
Sbjct: 213 HRAARPRVWRAAPPDEVLWFLRRDADRG 240



>Os01g0165900 
          Length = 190

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 62/120 (51%), Gaps = 30/120 (25%)

Query: 49  KPEVGWMKLNFDGSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTXXXXXXXX 108
           KPE GWMKLNFDGS   +TG ASI    R   G  +A                       
Sbjct: 50  KPEEGWMKLNFDGSSKHSTGIASISTVLR--RGLELA----------------------- 84

Query: 109 XXXXXXXYGWRRVWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSHLC 168
                   GWR +WAEGDS+ +VDVV  RA ++SE+D R C EIA LLP LD +AV H+ 
Sbjct: 85  -----VQNGWRLIWAEGDSKVMVDVVRDRADMQSEKDLRLCREIATLLPQLDDMAVFHVS 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,197,428
Number of extensions: 264962
Number of successful extensions: 691
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)