Os03g0158600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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Os03g0158600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.81 | 0.685 | 3.09 | -0.593 | 0.0781 | -1.06 | -1.3 | -10 | -0.0905 | 5.29 | 9.063 | 744 | -- | -- |
| 218.66 | 0.694 | 3.15 | -0.529 | 0.0414 | 0.791 | -1.28 | -- | -0.129 | 4.39 | 9.063 | 744 | -- | -- |
| 216.42 | 0.685 | 3.09 | -0.605 | 0.113 | -0.87 | -- | -9.77 | -0.0668 | 9.32 | 9.039 | 757 | -- | -- |
| 218.83 | 0.689 | 3.14 | -0.494 | 0.188 | 1.34 | -- | -- | -0.105 | 7.25 | 9 | 556 | -- | -- |
| 217.22 | 0.686 | 3.09 | -0.597 | -- | -1.11 | -- | -9.81 | -0.0849 | -- | 9.043 | 760 | -- | -- |
| 221.6 | 0.698 | 3.16 | -0.586 | 0.0322 | -- | -1.19 | -- | -0.146 | 4.56 | -- | -- | -- | -- |
| 224.85 | 0.702 | 3.15 | -0.577 | 0.0979 | -- | -- | -- | -0.139 | 9.32 | -- | -- | -- | -- |
| 219.64 | 0.69 | 3.14 | -0.479 | -- | 1.24 | -- | -- | -0.101 | -- | 9 | 556 | -- | -- |
| 224.34 | 0.698 | 3.12 | -- | 0.151 | 1.52 | -- | -- | -0.0246 | 7.63 | 9 | 609 | -- | -- |
| 225.41 | 0.702 | 3.15 | -0.577 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 233.63 | 0.715 | 3.14 | -- | 0.0987 | -- | -- | -- | -0.0751 | 9.76 | -- | -- | -- | -- |
| 225.43 | 0.699 | 3.13 | -- | -- | 1.42 | -- | -- | -0.0401 | -- | 9.062 | 609 | -- | -- |
| 234.21 | 0.714 | 3.14 | -- | -- | -- | -- | -- | -0.0749 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.66 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 201.72 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 1 |
| 12 | 201.72 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 25 | 206.44 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 35 | 206.44 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 78 | 207.31 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 2 |
| 107 | 208.40 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 5 |
| 134 | 209.92 | wind | 7 | 270 | > th | dose independent | rect. | 18 | 1 |
| 135 | 209.96 | radiation | 1 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 137 | 210.12 | temperature | 25 | 30 | < th | dose independent | rect. | 18 | 15 |
| 161 | 210.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 180 | 210.84 | wind | 7 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 185 | 210.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 190 | 211.16 | radiation | 10 | 10 | < th | dose independent | sin | 11 | NA |
| 199 | 211.32 | wind | 7 | 270 | > th | dose independent | rect. | 16 | 5 |
| 200 | 211.32 | wind | 9 | 720 | < th | dose independent | rect. | 21 | 23 |
| 208 | 211.44 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 235 | 211.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 14 |
| 244 | 211.75 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 8 |
| 256 | 211.90 | wind | 5 | 270 | > th | dose dependent | rect. | 17 | 4 |
| 269 | 212.06 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 7 |
| 274 | 212.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 276 | 212.16 | wind | 9 | 720 | < th | dose independent | sin | 22 | NA |
| 280 | 212.17 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 282 | 212.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 286 | 212.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 13 |
| 292 | 212.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 306 | 212.36 | wind | 9 | 720 | > th | dose independent | sin | 20 | NA |
| 321 | 212.39 | wind | 9 | 720 | < th | dose independent | rect. | 3 | 15 |
| 341 | 212.48 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 14 |
| 363 | 212.55 | wind | 9 | 720 | < th | dose independent | rect. | 8 | 17 |
| 387 | 212.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 390 | 212.65 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 18 | 2 |
| 393 | 212.65 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 18 | 2 |
| 436 | 212.73 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 7 |
| 444 | 212.74 | wind | 3 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 445 | 212.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 486 | 212.86 | wind | 7 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 499 | 212.88 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 9 | 18 |
| 502 | 212.89 | humidity | 80 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 504 | 212.89 | wind | 3 | 30 | < th | dose dependent | rect. | 8 | 23 |
| 507 | 212.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 6 |
| 519 | 212.93 | wind | 9 | 270 | < th | dose dependent | rect. | 13 | 13 |
| 521 | 212.94 | wind | 7 | 720 | < th | dose independent | rect. | 8 | 11 |
| 532 | 212.95 | wind | 9 | 30 | < th | dose dependent | rect. | 8 | 23 |
| 556 | 213.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 597 | 213.04 | wind | 7 | 720 | > th | dose dependent | rect. | 13 | 1 |
| 638 | 213.08 | wind | 9 | 720 | > th | dose dependent | rect. | 14 | 3 |
| 642 | 213.09 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 9 | 21 |
| 643 | 213.09 | wind | 9 | 720 | > th | dose independent | rect. | 15 | 23 |
| 674 | 213.16 | wind | 9 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 675 | 213.16 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 1 |
| 678 | 213.16 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 5 |
| 681 | 213.16 | wind | 9 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 684 | 213.17 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 721 | 213.17 | wind | 3 | 10 | > th | dose dependent | rect. | 18 | 7 |
| 732 | 213.20 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 3 |
| 735 | 213.20 | atmosphere | 1005 | 30 | < th | dose independent | rect. | 9 | 21 |
| 745 | 213.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 764 | 213.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 801 | 213.31 | humidity | 80 | 270 | < th | dose dependent | rect. | 23 | 5 |
| 803 | 213.31 | wind | 9 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 864 | 213.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 898 | 213.46 | wind | 7 | 720 | > th | dose independent | rect. | 12 | 2 |
| 911 | 213.48 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 935 | 213.50 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 939 | 213.51 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 14 | 16 |
| 942 | 213.52 | atmosphere | 1005 | 720 | < th | dose independent | sin | 18 | NA |
| 947 | 213.52 | wind | 9 | 720 | < th | dose independent | rect. | 11 | 23 |
| 998 | 213.59 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 18 | 14 |