BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0157800 Os03g0157800|AK067375
         (600 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0157800  3\'-5\' exonuclease domain containing protein      1098   0.0  
Os10g0437200  Similar to Nucleolar protein-like                   369   e-102

>Os03g0157800 3\'-5\' exonuclease domain containing protein
          Length = 600

 Score = 1098 bits (2841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/572 (92%), Positives = 531/572 (92%)

Query: 29  FQVVRGKKKKRPNXXXXXXXXXXTMMXXXXXXXXXXXXXXXXXXVSFHDPNIPRPQDVYA 88
           FQVVRGKKKKRPN          TMM                  VSFHDPNIPRPQDVYA
Sbjct: 29  FQVVRGKKKKRPNGGSASGAGSGTMMAKDKAAAAAAAEPWTKAKVSFHDPNIPRPQDVYA 88

Query: 89  IRVNNYNVPFDHVWLERTEDGSRPIHPLEKLPMEQFIDRNVPESEPVKPADLEDTPFTLV 148
           IRVNNYNVPFDHVWLERTEDGSRPIHPLEKLPMEQFIDRNVPESEPVKPADLEDTPFTLV
Sbjct: 89  IRVNNYNVPFDHVWLERTEDGSRPIHPLEKLPMEQFIDRNVPESEPVKPADLEDTPFTLV 148

Query: 149 EDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGL 208
           EDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGL
Sbjct: 149 EDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGL 208

Query: 209 YLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERNSLEHLLRHF 268
           YLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERNSLEHLLRHF
Sbjct: 209 YLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERNSLEHLLRHF 268

Query: 269 CGVTANKEYQNADWRSRPLSDEMIKYAREDTHXXXXXXXXXXXXXQKESTSDNDLLLEVQ 328
           CGVTANKEYQNADWRSRPLSDEMIKYAREDTH             QKESTSDNDLLLEVQ
Sbjct: 269 CGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSDNDLLLEVQ 328

Query: 329 KRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDESTGY 388
           KRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDESTGY
Sbjct: 329 KRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDESTGY 388

Query: 389 VLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESRAEQL 448
           VLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESRAEQL
Sbjct: 389 VLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESRAEQL 448

Query: 449 KKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQVAQATFQELKRPMAL 508
           KKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQVAQATFQELKRPMAL
Sbjct: 449 KKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQVAQATFQELKRPMAL 508

Query: 509 GAVGNSTSGGQRDFFGGFSNKSEKMEKAKSYPAFYYPQLPQYSPEVGYGFQSINRTMAGT 568
           GAVGNSTSGGQRDFFGGFSNKSEKMEKAKSYPAFYYPQLPQYSPEVGYGFQSINRTMAGT
Sbjct: 509 GAVGNSTSGGQRDFFGGFSNKSEKMEKAKSYPAFYYPQLPQYSPEVGYGFQSINRTMAGT 568

Query: 569 AQSPTGNKERDLQNPRRRQSFPPSGNISDTHQ 600
           AQSPTGNKERDLQNPRRRQSFPPSGNISDTHQ
Sbjct: 569 AQSPTGNKERDLQNPRRRQSFPPSGNISDTHQ 600



>Os10g0437200 Similar to Nucleolar protein-like
          Length = 409

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/221 (76%), Positives = 191/221 (86%)

Query: 73  VSFHDPNIPRPQDVYAIRVNNYNVPFDHVWLERTEDGSRPIHPLEKLPMEQFIDRNVPES 132
           V FH P IPRPQDV+ I V+N + PF+H WLE+++DGSR +HPLEK+PMEQ +DR+ PES
Sbjct: 189 VPFHIPTIPRPQDVHRILVDNSSKPFEHSWLEKSDDGSRVVHPLEKIPMEQLVDRDFPES 248

Query: 133 EPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRT 192
           EP+KP  L+DTPFT VED   L  LA KLKS  EFAVDLEHN YRSFQGLTCLMQISTRT
Sbjct: 249 EPIKPPALDDTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRT 308

Query: 193 EDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASR 252
           EDF+VDTLKLR Y+G YL+E FKDPTK+KVMHGADRDI+WLQRDF IYVCNLFDTGQASR
Sbjct: 309 EDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASR 368

Query: 253 VLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIK 293
           +LQM+RNSLEHLL HFCGVTANKEYQ+ADWR RPL DEMIK
Sbjct: 369 ILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIK 409



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,807,219
Number of extensions: 723328
Number of successful extensions: 1884
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1883
Number of HSP's successfully gapped: 2
Length of query: 600
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 493
Effective length of database: 11,448,903
Effective search space: 5644309179
Effective search space used: 5644309179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)