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Os10g0437200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nucleolar protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.86 (0.0235) R2 : 0.772
β1 : 1.2 (0.0863) R2dD : 0.0999 R2D : 0.0924
β2 : 2.22 (0.061) R2dC : 0.663 R2C : 0.653
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.185 (0.0503) R2dN8 : 0.00912 R2N8 : 0.0194
σ : 0.443
deviance : 89.45
__
_____
C
peak time of C : 16.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.24 0.418 9.88 1.12 2.04 0.57 0.296 -0.526 -0.25 17.5 20.23 103 -- --
80.1 0.417 9.88 1.12 2.03 0.572 0.193 -- -0.239 17.5 20.56 122 -- --
79.4 0.415 9.88 1.12 2.04 0.573 -- -0.482 -0.249 17.5 20.23 106 -- --
80.18 0.417 9.88 1.12 2.02 0.567 -- -- -0.239 17.5 20.55 122 -- --
100.83 0.468 9.79 1.08 -- 2.41 -- -1.43 -0.278 -- 1.745 618 -- --
89.44 0.443 9.86 1.2 2.22 -- 0.0478 -- -0.186 16.9 -- -- -- --
89.45 0.443 9.86 1.2 2.22 -- -- -- -0.185 16.9 -- -- -- --
94.4 0.453 9.85 1.02 -- 2.43 -- -- -0.298 -- 0.6805 634 -- --
113.64 0.496 9.88 -- 1.99 0.623 -- -- -0.3 17.5 20.04 122 -- --
348.69 0.873 9.84 1.11 -- -- -- -- -0.243 -- -- -- -- --
127.16 0.528 9.89 -- 2.2 -- -- -- -0.319 16.9 -- -- -- --
120.28 0.511 9.88 -- -- 2.55 -- -- -0.354 -- 0.009999 635 -- --
381.46 0.912 9.86 -- -- -- -- -- -0.366 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.73 wind 7.0 270 < th dose independent rect. 7 20
2 67.35 wind 7.0 270 < th dose independent rect. 8 18
5 68.00 wind 5.0 270 < th dose independent rect. 3 4
9 68.57 radiation 30.0 270 < th dose dependent rect. 2 7
13 68.67 humidity 70.0 90 > th dose independent rect. 4 15
14 68.73 wind 9.0 270 < th dose independent rect. 5 23
16 68.88 precipitation 0.1 270 < th dose independent rect. 3 4
17 68.88 precipitation 0.1 270 < th dose dependent rect. 3 4
20 68.94 wind 9.0 270 < th dose dependent rect. 3 4
22 69.02 wind 7.0 270 < th dose independent rect. 7 8
24 69.05 radiation 20.0 270 < th dose independent rect. 2 6
27 69.13 radiation 30.0 270 < th dose dependent rect. 3 4
30 69.15 precipitation 0.1 270 < th dose independent rect. 7 20
31 69.15 precipitation 0.1 270 < th dose dependent rect. 7 20
38 69.25 temperature 10.0 270 > th dose dependent rect. 3 4
42 69.30 temperature 10.0 270 > th dose independent rect. 3 4
44 69.30 temperature 30.0 270 < th dose independent rect. 3 4
45 69.30 humidity 50.0 270 > th dose independent rect. 3 4
47 69.30 atmosphere 995.0 270 > th dose independent rect. 3 4
48 69.30 atmosphere 1015.0 270 < th dose independent rect. 3 4
49 69.30 radiation 30.0 270 < th dose independent rect. 3 4
52 69.30 temperature 10.0 270 > th dose independent rect. 7 20
54 69.34 radiation 10.0 270 < th dose independent rect. 3 4
57 69.37 radiation 40.0 90 < th dose independent rect. 4 19
61 69.41 wind 5.0 270 < th dose independent rect. 4 1
76 69.67 precipitation 0.1 270 < th dose independent rect. 2 6
77 69.67 precipitation 0.1 270 < th dose dependent rect. 2 6
83 69.72 temperature 10.0 270 > th dose dependent rect. 7 7
100 69.80 temperature 15.0 270 > th dose independent rect. 15 16
101 69.81 precipitation 0.1 270 < th dose independent rect. 8 18
102 69.81 precipitation 0.1 270 < th dose dependent rect. 8 18
114 69.97 humidity 60.0 90 > th dose dependent rect. 4 15
116 70.01 temperature 15.0 270 > th dose independent rect. 7 8
120 70.07 temperature 10.0 270 > th dose independent rect. 2 6
122 70.07 temperature 30.0 270 < th dose independent rect. 2 6
123 70.07 humidity 50.0 270 > th dose independent rect. 2 6
125 70.07 atmosphere 995.0 270 > th dose independent rect. 2 6
126 70.07 atmosphere 1015.0 270 < th dose independent rect. 2 6
127 70.07 temperature 10.0 270 > th dose independent rect. 8 18
128 70.07 radiation 40.0 270 < th dose dependent rect. 15 16
155 70.19 humidity 70.0 90 > th dose independent rect. 4 7
168 70.29 radiation 1.0 270 > th dose independent rect. 7 8
214 70.58 humidity 50.0 270 > th dose dependent rect. 3 4
217 70.62 radiation 1.0 270 < th dose dependent rect. 4 1
232 70.67 radiation 40.0 270 < th dose dependent rect. 2 15
253 70.74 radiation 30.0 270 < th dose independent rect. 14 17
271 70.78 humidity 50.0 270 > th dose independent rect. 15 16
272 70.78 radiation 40.0 270 < th dose dependent rect. 4 1
288 70.89 radiation 1.0 270 < th dose independent rect. 4 1
293 70.93 temperature 15.0 270 > th dose independent rect. 12 10
297 70.94 humidity 50.0 270 > th dose dependent rect. 2 17
307 70.98 precipitation 0.1 270 < th dose independent rect. 7 8
309 70.98 precipitation 0.1 270 < th dose dependent rect. 7 8
328 71.12 wind 1.0 270 > th dose independent rect. 8 18
331 71.13 radiation 40.0 90 < th dose dependent rect. 4 19
336 71.17 humidity 50.0 270 > th dose dependent rect. 2 6
340 71.21 radiation 40.0 270 < th dose independent rect. 2 15
343 71.23 radiation 40.0 270 < th dose independent rect. 11 21
355 71.30 atmosphere 1015.0 270 < th dose independent rect. 7 8
373 71.35 atmosphere 995.0 270 > th dose independent rect. 15 16
394 71.40 wind 9.0 270 < th dose dependent rect. 7 7
406 71.46 wind 7.0 270 < th dose independent rect. 22 14
421 71.54 humidity 90.0 270 < th dose independent rect. 7 7
422 71.54 radiation 40.0 90 < th dose independent rect. 4 15
428 71.58 atmosphere 995.0 270 > th dose independent rect. 7 8
435 71.60 humidity 50.0 270 > th dose dependent rect. 4 1
443 71.62 wind 9.0 270 < th dose dependent rect. 7 19
472 71.70 radiation 1.0 270 < th dose independent rect. 3 16
475 71.71 radiation 40.0 270 < th dose independent rect. 2 17
489 71.78 wind 7.0 270 < th dose independent rect. 19 8
491 71.78 humidity 60.0 270 > th dose dependent rect. 2 13
493 71.79 atmosphere 1015.0 270 < th dose independent rect. 15 16
513 71.85 precipitation 0.1 270 < th dose independent rect. 15 16
516 71.85 precipitation 0.1 270 < th dose dependent rect. 15 16
532 71.89 atmosphere 1010.0 270 < th dose independent rect. 12 10
564 71.97 wind 9.0 270 < th dose independent rect. 15 16
605 72.08 radiation 20.0 90 < th dose independent rect. 4 19
616 72.11 atmosphere 1000.0 90 > th dose dependent rect. 4 4
619 72.12 humidity 60.0 90 > th dose dependent rect. 4 7
631 72.17 wind 1.0 270 > th dose independent rect. 7 8
655 72.21 humidity 60.0 90 > th dose dependent rect. 4 11
701 72.34 temperature 10.0 270 > th dose independent rect. 19 8
702 72.34 temperature 30.0 270 < th dose independent rect. 19 8
703 72.34 humidity 50.0 270 > th dose independent rect. 19 8
704 72.34 atmosphere 995.0 270 > th dose independent rect. 19 8
705 72.34 radiation 1.0 270 < th dose independent rect. 19 8
710 72.34 temperature 10.0 270 > th dose independent rect. 3 16
711 72.34 atmosphere 1015.0 270 < th dose independent rect. 3 16
713 72.34 radiation 1.0 270 < th dose dependent rect. 19 8
727 72.37 precipitation 0.1 270 < th dose independent rect. 19 8
729 72.37 precipitation 0.1 270 < th dose dependent rect. 19 8
738 72.40 temperature 10.0 10 > th dose dependent rect. 9 6
741 72.41 radiation 40.0 90 < th dose independent rect. 13 10
744 72.43 humidity 50.0 270 > th dose independent rect. 7 8
788 72.55 humidity 80.0 270 > th dose independent rect. 2 12
799 72.59 atmosphere 995.0 90 > th dose independent rect. 8 20
819 72.64 atmosphere 1000.0 270 > th dose dependent rect. 4 1
821 72.65 temperature 10.0 1440 > th dose independent rect. 5 5
824 72.65 atmosphere 995.0 1440 > th dose independent rect. 5 5
825 72.65 atmosphere 1015.0 1440 < th dose independent rect. 5 5
830 72.65 temperature 10.0 1440 > th dose independent rect. 10 19
866 72.73 precipitation 0.1 270 < th dose independent rect. 3 16
870 72.73 precipitation 0.1 270 < th dose dependent rect. 3 16
881 72.77 atmosphere 995.0 270 > th dose independent rect. 3 16
891 72.80 temperature 30.0 270 < th dose dependent rect. 23 2
908 72.83 radiation 40.0 270 < th dose independent rect. 1 21
932 72.87 temperature 10.0 270 > th dose independent rect. 22 14
933 72.87 atmosphere 995.0 270 > th dose independent rect. 22 14
989 72.97 humidity 50.0 270 > th dose dependent rect. 21 5