Os03g0157800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3'-5' exonuclease domain containing protein.
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Os03g0157800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 3'-5' exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.86 | 0.325 | 10.4 | -0.648 | 1.76 | -1.51 | -0.0969 | -1.04 | -0.0659 | 16.1 | 25.5 | 384 | -- | -- |
| 49.23 | 0.327 | 10.4 | -0.79 | 1.74 | -1.43 | 0.0152 | -- | -0.0873 | 16.1 | 25.83 | 368 | -- | -- |
| 47.86 | 0.322 | 10.4 | -0.653 | 1.77 | -1.5 | -- | -1 | -0.0667 | 16 | 25.5 | 396 | -- | -- |
| 49.11 | 0.326 | 10.4 | -0.826 | 1.75 | -1.44 | -- | -- | -0.11 | 16.1 | 25.86 | 375 | -- | -- |
| 137.85 | 0.547 | 10.4 | -1.17 | -- | -3.19 | -- | -0.041 | -0.273 | -- | 73.11 | 204 | -- | -- |
| 79.11 | 0.417 | 10.3 | -0.459 | 1.97 | -- | 0.174 | -- | 0.2 | 16.3 | -- | -- | -- | -- |
| 79.19 | 0.417 | 10.3 | -0.457 | 1.97 | -- | -- | -- | 0.201 | 16.3 | -- | -- | -- | -- |
| 136.9 | 0.545 | 10.4 | -1.17 | -- | -2.84 | -- | -- | -0.261 | -- | 31.64 | 216 | -- | -- |
| 65.27 | 0.376 | 10.3 | -- | 1.83 | -1.11 | -- | -- | 0.0421 | 16.1 | 25.8 | 399 | -- | -- |
| 287.88 | 0.793 | 10.3 | -0.536 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 84.71 | 0.431 | 10.3 | -- | 1.98 | -- | -- | -- | 0.252 | 16.3 | -- | -- | -- | -- |
| 171.89 | 0.611 | 10.4 | -- | -- | -2.81 | -- | -- | -0.1 | -- | 44.57 | 195 | -- | -- |
| 295.46 | 0.802 | 10.3 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 3 | 47.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 4 | 47.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 7 | 47.60 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 24 | 48.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 31 | 48.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 45 | 48.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 21 |
| 55 | 48.78 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 71 | 49.02 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 76 | 49.03 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 89 | 49.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 115 | 49.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 140 | 49.65 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 145 | 49.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 151 | 49.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 171 | 49.88 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 244 | 50.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 264 | 50.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 334 | 50.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 375 | 50.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 401 | 50.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 495 | 50.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 538 | 50.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 623 | 51.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |