BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0150700 Os03g0150700|Os03g0150700
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0150700 Conserved hypothetical protein 492 e-139
Os12g0173400 Conserved hypothetical protein 121 7e-28
Os12g0534700 Protein kinase-like domain containing protein 74 1e-13
Os08g0140600 67 1e-11
>Os03g0150700 Conserved hypothetical protein
Length = 307
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/307 (82%), Positives = 253/307 (82%)
Query: 1 MEVDTGAERCGDAASHLHCRSEEAVTGGDAKRLRKGSXXXXXXXXXXXXXXXXXXEPPSN 60
MEVDTGAERCGDAASHLHCRSEEAVTGGDAKRLRKGS EPPSN
Sbjct: 1 MEVDTGAERCGDAASHLHCRSEEAVTGGDAKRLRKGSGDDDHHQYMDDDDDYGDDEPPSN 60
Query: 61 PLDSYREDWVEIYGKTGSFEDETHLDALDSTXXXXXXXXXXXXEFDFDALGIAVGGAEIL 120
PLDSYREDWVEIYGKTGSFEDETHLDALDST EFDFDALGIAVGGAEIL
Sbjct: 61 PLDSYREDWVEIYGKTGSFEDETHLDALDSTVAAAIRARFIVVEFDFDALGIAVGGAEIL 120
Query: 121 PMRHTDGPIWPESWPMNLLQIFSVKVVEVMGDLQWPLDVYGVVADSSSLVLTGPSRAXXX 180
PMRHTDGPIWPESWPMNLLQIFSVKVVEVMGDLQWPLDVYGVVADSSSLVLTGPSRA
Sbjct: 121 PMRHTDGPIWPESWPMNLLQIFSVKVVEVMGDLQWPLDVYGVVADSSSLVLTGPSRAVVV 180
Query: 181 XXXXXXXXXXKVKVEATIIIHVVQGSTDFRARFSARTAGIDEDVVLLDSGDRKVVVADDG 240
KVKVEATIIIHVVQGSTDFRARFSARTAGIDEDVVLLDSGDRKVVVADDG
Sbjct: 181 LDPVVFEVDLKVKVEATIIIHVVQGSTDFRARFSARTAGIDEDVVLLDSGDRKVVVADDG 240
Query: 241 XXXXXXXXXXXEEKGKLNLRVEASENGSDTVVGKQMSFSARPALRSEGRFVLGFCTMSVI 300
EEKGKLNLRVEASENGSDTVVGKQMSFSARPALRSEGRFVLGFCTMSVI
Sbjct: 241 LVVLQRRVVVVEEKGKLNLRVEASENGSDTVVGKQMSFSARPALRSEGRFVLGFCTMSVI 300
Query: 301 VAWSVLP 307
VAWSVLP
Sbjct: 301 VAWSVLP 307
>Os12g0173400 Conserved hypothetical protein
Length = 366
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 194 VEATIIIHVVQGSTDFRARFSARTAGIDEDVVLLDSGDRKVVVADDG-----XXXXXXXX 248
VEATI + V++GSTDFRAR +ARTAGIDEDVVLLDSGD KV V +D
Sbjct: 248 VEATIAVRVIEGSTDFRARLTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRV 307
Query: 249 XXXEEKGKLNLRVEASENGSDTVVGKQMSFSARPALRSEGRFVLGFCTMSVIVAWSVLP 307
EEKG L L VEA+E GS+ +V +Q+ R ALRS F LGFC MSV++AWSVLP
Sbjct: 308 VVVEEKGSLILGVEAAEIGSEEIVTRQVDIRPRHALRSRCGFNLGFCRMSVMIAWSVLP 366
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 88/207 (42%), Gaps = 66/207 (31%)
Query: 1 MEVDTGAERCGDAASHLHCRSEEAVTGGDAKRLRK-GSXXXXXXXXXXXXXXXXXXEPPS 59
MEVD+G R G + EE GGDAKR R+ G S
Sbjct: 1 MEVDSG--RNGTGHGQIAGPDEEIPAGGDAKRSREEGGRNTTTTCQEDEDEDNDYYNDDS 58
Query: 60 NPLDSYREDWVEIYGKT--GSFEDETHLDALDSTXXXXXXXXXXXXEFDFDALGIAVGGA 117
N LDSYR W YGK SFEDET
Sbjct: 59 NFLDSYRTTWATNYGKNDGSSFEDET---------------------------------- 84
Query: 118 EILPMRHTDGPIWP-ESWPMNLLQIFSVKVVEVMGDLQWPLDVYGVVA------------ 164
I PM+HTDGP+ P SWPM++LQIFSVKV EVMG+L+WPL VYG+VA
Sbjct: 85 AIRPMQHTDGPVLPISSWPMDVLQIFSVKVTEVMGNLEWPLRVYGIVAVRDSLDHKRNVL 144
Query: 165 --------------DSSSLVLTGPSRA 177
SSL LTGPSRA
Sbjct: 145 FRRDRDDCQTLTSPQDSSLTLTGPSRA 171
>Os12g0534700 Protein kinase-like domain containing protein
Length = 331
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 192 VKVEATIIIHVVQGSTDFRARFSARTAGIDEDVVLLDSGDRKVVVADDGXXXXXXXXXXX 251
+ +EATI + + +GSTDF +F A TA I EDV+LLDSG+ V ++ DG
Sbjct: 215 LALEATIKVRITRGSTDFCGKFIAHTASIKEDVILLDSGEEMVAISHDGAINFSRSVVAV 274
Query: 252 EEKGK-LNLRVEASENGSDTVVGKQMSFSARPALRSEGRFVLGFCTMSVIVAWSVL 306
E G L + V A ++G + + F RS +GFC MSV VAWS++
Sbjct: 275 EGNGGVLTVGVHARQSGGENMRCSYKEFIPVRCGRSHDTLDVGFCQMSVEVAWSLI 330
>Os08g0140600
Length = 281
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 20/132 (15%)
Query: 194 VEATIIIHVVQGS--TDFRARFSARTAGI---------------DEDVVLLDS-GDRKVV 235
VEATI + V+ GS F +F+A T G+ DE ++LLDS GD+KVV
Sbjct: 140 VEATIFVRVICGSWPDGFHGQFAAFTTGVRWKDLAREKNIASVDDERILLLDSRGDQKVV 199
Query: 236 VA-DDGXXXXXXXXXXXEEKGKLNLRVEASENGSDTVVGKQMSFSARPALRSEGRFVLGF 294
V DDG E+KG+L + V A + D+VV +M F+A A S G +GF
Sbjct: 200 VTGDDGKIVLSRCVVSVEDKGELKVHVRAWKV-DDSVVEAEMVFTALKAGLSNGELDMGF 258
Query: 295 CTMSVIVAWSVL 306
C + V VAWS++
Sbjct: 259 CKLGVSVAWSLI 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,052,080
Number of extensions: 302252
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 588
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)