Os03g0150700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0150700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.1 | 0.648 | 5.47 | 0.827 | 0.582 | -2.92 | -1.41 | 5.27 | 0.48 | 21.9 | 23.98 | 1573 | -- | -- |
| 203.59 | 0.665 | 5.61 | -0.558 | 0.793 | -2.72 | -1.18 | -- | 0.242 | 20.6 | 22.9 | 1844 | -- | -- |
| 196.71 | 0.653 | 5.47 | 0.819 | 0.764 | -3.09 | -- | 5.13 | 0.532 | 20.8 | 23.55 | 1760 | -- | -- |
| 207.83 | 0.671 | 5.62 | -0.547 | 0.769 | -2.67 | -- | -- | 0.207 | 20.8 | 22.73 | 1830 | -- | -- |
| 217.12 | 0.686 | 5.44 | 0.829 | -- | -2.78 | -- | 4.7 | 0.528 | -- | 23.5 | 1519 | -- | -- |
| 420.53 | 0.961 | 5.74 | -1.54 | 0.475 | -- | -1.44 | -- | -0.346 | 22.2 | -- | -- | -- | -- |
| 428.45 | 0.969 | 5.74 | -1.48 | 0.494 | -- | -- | -- | -0.34 | 21.6 | -- | -- | -- | -- |
| 227.43 | 0.702 | 5.61 | -0.598 | -- | -2.39 | -- | -- | 0.177 | -- | 22.88 | 1534 | -- | -- |
| 215.96 | 0.684 | 5.61 | -- | 0.804 | -2.8 | -- | -- | 0.267 | 20.7 | 22.8 | 1844 | -- | -- |
| 442.89 | 0.983 | 5.73 | -1.48 | -- | -- | -- | -- | -0.342 | -- | -- | -- | -- | -- |
| 486.14 | 1.03 | 5.71 | -- | 0.493 | -- | -- | -- | -0.176 | 21.4 | -- | -- | -- | -- |
| 232 | 0.709 | 5.57 | -- | -- | -2.67 | -- | -- | 0.376 | -- | 21 | 5987 | -- | -- |
| 500.32 | 1.04 | 5.69 | -- | -- | -- | -- | -- | -0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 7 | 190.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 38 | 191.62 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 83 | 192.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 115 | 192.69 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 122 | 192.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 127 | 192.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 245 | 197.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 255 | 198.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 356 | 205.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 362 | 206.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 368 | 206.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 380 | 207.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 410 | 207.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 440 | 208.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 452 | 208.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 577 | 210.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 753 | 214.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 767 | 215.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 796 | 216.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 823 | 216.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 20 |
| 828 | 216.65 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 833 | 216.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 19 |
| 860 | 217.07 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 872 | 217.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 16 |
| 876 | 217.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 937 | 217.70 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 954 | 217.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 16 |
| 963 | 217.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 977 | 218.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |