BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0145600 Os03g0145600|AK106243
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0145600 Quinonprotein alcohol dehydrogenase-like domai... 820 0.0
Os01g0187500 Similar to Zfwd3 protein (Fragment) 178 8e-45
Os03g0145775 WD40-like domain containing protein 135 5e-32
Os02g0677700 Quinonprotein alcohol dehydrogenase-like domai... 71 2e-12
Os10g0104500 Similar to Notchless-related 69 1e-11
Os11g0594200 Similar to Notchless gene homolog 68 1e-11
>Os03g0145600 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 427
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/427 (94%), Positives = 403/427 (94%)
Query: 1 MAAVXXXXXXXXXXXXXRRGKPGCWNTPPAPPKVCHYWKSGRCSRNPCRFLHTXXXXXXX 60
MAAV RRGKPGCWNTPPAPPKVCHYWKSGRCSRNPCRFLHT
Sbjct: 1 MAAVQLLPLPPAAPPQPRRGKPGCWNTPPAPPKVCHYWKSGRCSRNPCRFLHTDAPDPAP 60
Query: 61 XXXXVNTRSNTWVNPSCVAANSDGKGRAPPVQPAKRQVEAPPETPAKRRCGGGAWCVGDG 120
VNTRSNTWVNPSCVAANSDGKGRAPPVQPAKRQVEAPPETPAKRRCGGGAWCVGDG
Sbjct: 61 PIAAVNTRSNTWVNPSCVAANSDGKGRAPPVQPAKRQVEAPPETPAKRRCGGGAWCVGDG 120
Query: 121 FCGVARLKGHAKAVTGFALPEGSDKLFSGSLDSTVRAWDCSTGQCVRVEEMQEGEVHKLI 180
FCGVARLKGHAKAVTGFALPEGSDKLFSGSLDSTVRAWDCSTGQCVRVEEMQEGEVHKLI
Sbjct: 121 FCGVARLKGHAKAVTGFALPEGSDKLFSGSLDSTVRAWDCSTGQCVRVEEMQEGEVHKLI 180
Query: 181 AMGPWVLAGVRGAVKAIHTGTGKELRLRGPASQITAMLAEDEDHLFAGAEDGAVFMWRMN 240
AMGPWVLAGVRGAVKAIHTGTGKELRLRGPASQITAMLAEDEDHLFAGAEDGAVFMWRMN
Sbjct: 181 AMGPWVLAGVRGAVKAIHTGTGKELRLRGPASQITAMLAEDEDHLFAGAEDGAVFMWRMN 240
Query: 241 QEQQSFDEVAALTGHYKAVVSLAQGKGALYSGSTDGSIRVWDLDTHRCIYSFAGHSSTVT 300
QEQQSFDEVAALTGHYKAVVSLAQGKGALYSGSTDGSIRVWDLDTHRCIYSFAGHSSTVT
Sbjct: 241 QEQQSFDEVAALTGHYKAVVSLAQGKGALYSGSTDGSIRVWDLDTHRCIYSFAGHSSTVT 300
Query: 301 ALLCWERFLLSSSDDGTVKVWQWKPDHDDLDLEVHYTHKEDERVVSMDGTYDADEKPVLL 360
ALLCWERFLLSSSDDGTVKVWQWKPDHDDLDLEVHYTHKEDERVVSMDGTYDADEKPVLL
Sbjct: 301 ALLCWERFLLSSSDDGTVKVWQWKPDHDDLDLEVHYTHKEDERVVSMDGTYDADEKPVLL 360
Query: 361 VSRGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGVVFTGDASGEVRVVKWTSLSDAA 420
VSRGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGVVFTGDASGEVRVVKWTSLSDAA
Sbjct: 361 VSRGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGVVFTGDASGEVRVVKWTSLSDAA 420
Query: 421 ESYLAMA 427
ESYLAMA
Sbjct: 421 ESYLAMA 427
>Os01g0187500 Similar to Zfwd3 protein (Fragment)
Length = 261
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 148/250 (59%), Gaps = 6/250 (2%)
Query: 165 CVRVEEMQEGEVHKLIAMGPWVLAGVRGAVKAIHTGTGKELRLRGPASQITAMLAEDEDH 224
CV +M G++ +I GPW+ G+ +V+A +T TG + LR P+ + +M +DE
Sbjct: 1 CVDAIKMG-GKIGCMITHGPWIFVGITKSVEAWNTQTGMKSSLREPSGLVCSMTIKDE-M 58
Query: 225 LFAGAEDGAVFMWRMNQEQQSFDEVAALTGHYKAVVSLAQGKGALYSGSTDGSIRVWDLD 284
LFAG DG + W++ ++ VA L+GH + V+SL LYSGS D +I+VWDL
Sbjct: 59 LFAGTGDGRIMAWKIPDKKGDSGPVAILSGHERQVISLGVSVTRLYSGSLDKTIKVWDLK 118
Query: 285 THRCIYSFAGHSSTVTALLCWERFLLSSSDDGTVKVWQWKPDHDDLDLEVHYTHKEDERV 344
T +C+ + + H + VT++LCW+ LLS S D TVK+W DL+V YTH E+ V
Sbjct: 119 TLQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSG---DLQVIYTHSEEHGV 175
Query: 345 VSMDGTYDADEKPVLLVS-RGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGVVFTGD 403
++ G + + PVL S +R++DLPS + G + EVRTI + + G++FTGD
Sbjct: 176 RTLFGMHRVGKTPVLFCSLHNSNCIRLFDLPSFDEMGKLFSKKEVRTIELAAGGLLFTGD 235
Query: 404 ASGEVRVVKW 413
+GE++V +W
Sbjct: 236 GAGELKVWRW 245
>Os03g0145775 WD40-like domain containing protein
Length = 79
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 72/76 (94%)
Query: 339 KEDERVVSMDGTYDADEKPVLLVSRGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGV 398
+ DERVVSMDGTYDADEKPVLL SRGDGVVRV+DLPSLKKRGDI+C DEV+TIS+RSRGV
Sbjct: 4 ERDERVVSMDGTYDADEKPVLLFSRGDGVVRVHDLPSLKKRGDILCYDEVKTISIRSRGV 63
Query: 399 VFTGDASGEVRVVKWT 414
VFTGDASGEVRV KWT
Sbjct: 64 VFTGDASGEVRVAKWT 79
>Os02g0677700 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 79
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 345 VSMDGTYDADEKPVLLVSRGDGVVRVYDLPSLKKRGDIICDDEVRTISVRSRGVVFTGDA 404
+++ G DA KPVLL S D VR+YDLPS RG I E+R I V G+ FTGD
Sbjct: 3 LALSGMPDAQSKPVLLCSLNDNTVRLYDLPSFSDRGRIFSKQEIRAIQVGPSGLFFTGDG 62
Query: 405 SGEVRVVKW 413
+GE++V +W
Sbjct: 63 TGELKVWQW 71
>Os10g0104500 Similar to Notchless-related
Length = 480
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 124 VARLKGHAKAVTGFALPEGSDKL-FSGSLDSTVRAWDCSTGQCVRVEEMQEGEVHKLIAM 182
V L GH +VT + G D L ++GS D +++ W+ S G+ V+ + V+ L
Sbjct: 240 VIALTGHTNSVT--CVKWGGDGLIYTGSEDCSIKVWETSQGKLVKTLQGHGHWVNSLALS 297
Query: 183 GPWVLAGVRGAVKAIHTG----TGKELRLRGPASQITAMLAEDEDHLFAGAEDGAVFMWR 238
+VL GA HTG T +E++ ++ M + L +G++D +F+W
Sbjct: 298 TEYVLR--TGAYD--HTGKTYSTAEEMK-EAALARYKKMRGNAPERLVSGSDDFTMFLWE 352
Query: 239 MNQEQQSFDEVAALTGHYKAV--VSLAQGKGALYSGSTDGSIRVWDLDTHRCIYSFAGHS 296
+Q A +TGH K V V + L S S D S+++W+ T + + +F GH
Sbjct: 353 PTISKQ---PKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHV 409
Query: 297 STVTALLCW---ERFLLSSSDDGTVKVWQWKPDHDDLDLEVH 335
+ V + W R LLS S D T+KVW + DL H
Sbjct: 410 ADVYQ-ISWSADSRLLLSGSKDSTLKVWDIRTRKLKQDLPGH 450
>Os11g0594200 Similar to Notchless gene homolog
Length = 480
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 28/253 (11%)
Query: 93 PAKRQVEAPPETPAKRRCGGGAWCVGDGFCGVARLKGHAKAVTGFALPEGSDKL-FSGSL 151
P +R V A + A+ W + C +A L GH +VT + G D L ++GS
Sbjct: 216 PCRRFVSASKDGDAR------IWDITTRKCVIA-LTGHTNSVT--CVKWGGDGLIYTGSE 266
Query: 152 DSTVRAWDCSTGQCVRVEEMQEGEVHKLIAMGPWVLAGVRGAVKAIHTG----TGKELRL 207
D ++ W+ S G+ V+ + V+ L ++L GA HTG T E++
Sbjct: 267 DCLIKVWETSQGKLVKTLQGHGHWVNSLALSTEYILR--TGAYD--HTGKTYSTADEMK- 321
Query: 208 RGPASQITAMLAEDEDHLFAGAEDGAVFMWRMNQEQQSFDEVAALTGHYKAV--VSLAQG 265
++ M + L +G++D +F+W +Q A +TGH K V V +
Sbjct: 322 EAALARYKKMRGNAPERLVSGSDDFTMFLWEPTISKQP---KARMTGHQKLVNHVYFSPD 378
Query: 266 KGALYSGSTDGSIRVWDLDTHRCIYSFAGHSSTVTALLCWE---RFLLSSSDDGTVKVWQ 322
L S S D S+++W+ T + + +F GH + V + W R LLS S D T+KVW
Sbjct: 379 GQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQI-SWSADSRLLLSGSKDSTLKVWD 437
Query: 323 WKPDHDDLDLEVH 335
+ DL H
Sbjct: 438 IRTHKLKQDLPGH 450
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,765,831
Number of extensions: 788220
Number of successful extensions: 3566
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 3577
Number of HSP's successfully gapped: 9
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)