FiT-DB / Search/ Help/ Sample detail

Os01g0187500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zfwd3 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0156) R2 : 0.509
β1 : -0.746 (0.057) R2dD : 0.191 R2D : 0.194
β2 : 0.663 (0.0407) R2dC : 0.288 R2C : 0.278
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.0332) R2dN8 : 0.0197 R2N8 : 0.0377
σ : 0.293
deviance : 39.1
__
_____
C
peak time of C : 6.03
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.64 0.273 11 -1.08 0.641 0.407 0.771 -0.847 0.0279 6.4 24.77 1263 -- --
34.07 0.272 11 -0.864 0.644 0.313 0.766 -- 0.073 6.36 23.54 2664 -- --
35.02 0.276 11 -1.02 0.638 0.387 -- -0.589 0.0244 6.31 23.82 1285 -- --
35.3 0.277 11 -0.877 0.65 0.333 -- -- 0.0767 6.17 23.99 5582 -- --
56.16 0.349 11 -1 -- 0.438 -- -0.523 0.0309 -- 23.9 1314 -- --
37.59 0.287 10.9 -0.754 0.659 -- 0.785 -- 0.126 6.1 -- -- -- --
39.1 0.293 10.9 -0.746 0.663 -- -- -- 0.123 6.03 -- -- -- --
56.32 0.35 11 -0.857 -- 0.4 -- -- 0.0563 -- 23.7 1310 -- --
52.62 0.338 10.9 -- 0.642 0.137 -- -- 0.21 6.1 32.7 6822 -- --
61.91 0.368 11 -0.727 -- -- -- -- 0.138 -- -- -- -- --
53.77 0.343 10.9 -- 0.652 -- -- -- 0.206 6.09 -- -- -- --
71.45 0.395 10.9 -- -- -0.413 -- -- 0.257 -- 24.1 1301 -- --
75.85 0.407 10.9 -- -- -- -- -- 0.218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.68 radiation 1.0 1440 < th dose independent rect. 11 1
2 30.68 radiation 1.0 1440 < th dose dependent rect. 11 1
3 32.05 precipitation 0.1 270 > th dose independent rect. 2 2
4 32.05 precipitation 0.1 270 > th dose dependent rect. 2 2
5 32.06 radiation 1.0 1440 < th dose dependent rect. 8 8
7 32.18 radiation 1.0 1440 < th dose independent rect. 8 7
9 32.20 radiation 1.0 1440 < th dose independent rect. 8 5
10 32.20 radiation 1.0 1440 < th dose dependent rect. 8 5
11 32.20 radiation 1.0 1440 < th dose dependent rect. 11 5
15 32.23 wind 9.0 43200 > th dose dependent rect. 11 9
16 32.26 wind 9.0 43200 > th dose independent rect. 14 5
17 32.28 wind 9.0 43200 > th dose dependent rect. 13 6
18 32.28 wind 9.0 43200 > th dose dependent rect. 11 12
19 32.29 wind 9.0 43200 > th dose independent rect. 11 12
21 32.31 wind 9.0 43200 > th dose independent rect. 11 8
32 32.33 radiation 1.0 1440 > th dose independent rect. 8 7
41 32.37 wind 9.0 43200 < th dose independent rect. 14 4
44 32.39 radiation 1.0 1440 < th dose independent rect. 13 2
47 32.39 wind 9.0 43200 < th dose independent rect. 11 8
49 32.39 wind 9.0 43200 < th dose independent rect. 11 11
59 32.43 radiation 1.0 1440 > th dose independent rect. 11 4
63 32.45 radiation 1.0 1440 > th dose independent rect. 13 2
83 32.49 wind 7.0 4320 > th dose independent rect. 17 1
86 32.49 wind 9.0 43200 > th dose independent rect. 14 8
93 32.51 wind 7.0 43200 > th dose dependent rect. 15 2
119 32.59 wind 5.0 4320 > th dose independent rect. 24 1
120 32.59 wind 5.0 4320 < th dose independent rect. 24 1
133 32.61 radiation 1.0 14400 < th dose dependent rect. 2 3
146 32.64 radiation 1.0 14400 < th dose dependent rect. 4 1
151 32.65 wind 9.0 43200 < th dose independent rect. 14 8
155 32.66 wind 7.0 4320 < th dose independent rect. 17 1
190 32.77 radiation 1.0 14400 < th dose dependent rect. 21 8
225 32.91 wind 7.0 43200 > th dose dependent rect. 11 2
230 32.92 temperature 20.0 14400 < th dose dependent rect. 5 1
233 32.92 temperature 20.0 14400 < th dose dependent rect. 2 4
238 32.93 temperature 20.0 14400 < th dose dependent rect. 2 1
240 32.93 temperature 25.0 720 > th dose dependent rect. 18 14
243 32.94 wind 1.0 43200 < th dose dependent rect. 20 1
257 32.97 wind 9.0 43200 > th dose independent rect. 11 1
268 32.99 temperature 25.0 720 > th dose dependent rect. 20 1
272 32.99 temperature 25.0 720 > th dose dependent rect. 18 11
274 33.00 humidity 70.0 43200 < th dose independent rect. 8 1
284 33.01 wind 9.0 43200 > th dose independent rect. 16 1
292 33.01 temperature 25.0 720 > th dose dependent rect. 18 7
299 33.02 temperature 20.0 43200 < th dose independent rect. 22 1
313 33.03 radiation 1.0 14400 < th dose independent rect. 9 1
314 33.03 wind 5.0 43200 < th dose independent rect. 11 2
316 33.03 wind 5.0 43200 > th dose independent rect. 10 4
325 33.03 radiation 1.0 43200 < th dose dependent rect. 7 8
333 33.04 radiation 1.0 43200 > th dose independent rect. 7 7
334 33.04 radiation 1.0 43200 < th dose independent rect. 7 7
341 33.05 temperature 20.0 43200 > th dose independent rect. 22 1
345 33.05 wind 5.0 43200 < th dose independent rect. 10 4
355 33.06 wind 5.0 43200 > th dose independent rect. 11 2
362 33.07 temperature 20.0 43200 > th dose independent rect. 6 1
363 33.07 radiation 1.0 43200 > th dose independent rect. 9 1
366 33.07 radiation 1.0 43200 < th dose dependent rect. 6 4
386 33.09 temperature 20.0 43200 < th dose independent rect. 1 1
402 33.10 temperature 20.0 43200 < th dose independent rect. 6 1
407 33.10 radiation 10.0 43200 < th dose independent rect. 4 2
413 33.10 radiation 10.0 43200 < th dose independent rect. 19 11
414 33.10 humidity 60.0 43200 < th dose dependent rect. 10 1
427 33.10 humidity 70.0 14400 < th dose dependent rect. 21 11
428 33.11 wind 9.0 43200 < th dose independent rect. 11 1
470 33.13 temperature 20.0 43200 < th dose independent rect. 22 9
487 33.14 temperature 20.0 43200 < th dose independent rect. 1 6
524 33.15 humidity 90.0 43200 > th dose dependent rect. 23 1
525 33.15 humidity 70.0 14400 < th dose dependent rect. 6 2
550 33.16 radiation 1.0 43200 > th dose independent rect. 7 4
590 33.17 temperature 20.0 43200 > th dose independent rect. 22 9
614 33.18 humidity 70.0 14400 < th dose independent rect. 21 11
621 33.18 radiation 1.0 43200 < th dose dependent rect. 9 4
624 33.19 humidity 90.0 43200 < th dose independent rect. 24 1
651 33.19 wind 5.0 4320 > th dose dependent rect. 17 2
655 33.20 temperature 20.0 43200 > th dose independent rect. 1 1
657 33.20 radiation 1.0 43200 > th dose independent rect. 4 1
688 33.20 radiation 1.0 1440 > th dose independent rect. 11 19
690 33.20 radiation 1.0 43200 > th dose dependent rect. 4 1
706 33.21 temperature 20.0 43200 < th dose independent sin 10 NA
754 33.21 radiation 1.0 43200 < th dose dependent rect. 6 17
800 33.23 wind 1.0 43200 > th dose independent rect. 9 1
812 33.23 humidity 50.0 14400 > th dose independent rect. 5 5
841 33.23 wind 3.0 4320 > th dose dependent rect. 24 1
847 33.23 radiation 1.0 1440 < th dose dependent rect. 5 11
852 33.24 temperature 20.0 43200 > th dose independent sin 10 NA
938 33.25 temperature 20.0 14400 < th dose dependent sin 7 NA
939 33.25 radiation 10.0 43200 < th dose dependent rect. 18 3
947 33.25 radiation 20.0 43200 < th dose dependent rect. 18 7
976 33.26 temperature 20.0 43200 < th dose independent rect. 14 12
996 33.26 radiation 1.0 1440 < th dose independent rect. 11 19