BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0145500 Os03g0145500|AK066503
(941 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0145500 uDENN domain containing protein 1607 0.0
Os02g0777100 uDENN domain containing protein 349 7e-96
>Os03g0145500 uDENN domain containing protein
Length = 941
Score = 1607 bits (4162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/917 (86%), Positives = 793/917 (86%)
Query: 25 RGAGMFEDAVEGSSTATESPVAVARPDGXXXXXXXXXXXXRTLXXXXXXXXXXXXXXXXX 84
RGAGMFEDAVEGSSTATESPVAVARPDG RTL
Sbjct: 25 RGAGMFEDAVEGSSTATESPVAVARPDGEATTESSSPSASRTLAGDEPAAAGAGEVEAYG 84
Query: 85 XXXXXXXXXXXXXXXXXDTGSAASPSVLRSEQRARGAEEQENSMAAQLGEGSPAREETKS 144
DTGSAASPSVLRSEQRARGAEEQENSMAAQLGEGSPAREETKS
Sbjct: 85 GDESPSVSEPREESGSVDTGSAASPSVLRSEQRARGAEEQENSMAAQLGEGSPAREETKS 144
Query: 145 RISSAXXXXXXXXXXXXXXXXXXQIKHQARHVRTGSFQRFRQQMQRAWKWXXXXXXXXXX 204
RISSA QIKHQARHVRTGSFQRFRQQMQRAWKW
Sbjct: 145 RISSAPSSPVLSGTSTSSSSPLSQIKHQARHVRTGSFQRFRQQMQRAWKWGPIGSGGGGE 204
Query: 205 XXXXXQLLRTTVNFEAMAHQKRQWYQIQSKSRDNKQYKEPTTLFEHFFVVGLHSYANVGV 264
QLLRTTVNFEAMAHQKRQWYQIQSKSRDNKQYKEPTTLFEHFFVVGLHSYANVGV
Sbjct: 205 RSPREQLLRTTVNFEAMAHQKRQWYQIQSKSRDNKQYKEPTTLFEHFFVVGLHSYANVGV 264
Query: 265 IEDAFAKKKAWESNVEHSEIVDLRKIQYHGPIPTMEPQILFKYPPGKKAEIREIDLPSFC 324
IEDAFAKKKAWESNVEHSEIVDLRKIQYHGPIPTMEPQILFKYPPGKKAEIREIDLPSFC
Sbjct: 265 IEDAFAKKKAWESNVEHSEIVDLRKIQYHGPIPTMEPQILFKYPPGKKAEIREIDLPSFC 324
Query: 325 FPEGVKARLIERTPSMSDLNEVVFGQEHLCRDDLSFIFSMKVSDNAPLYGVCLHVQEIVQ 384
FPEGVKARLIERTPSMSDLNEVVFGQEHLCRDDLSFIFSMKVSDNAPLYGVCLHVQEIVQ
Sbjct: 325 FPEGVKARLIERTPSMSDLNEVVFGQEHLCRDDLSFIFSMKVSDNAPLYGVCLHVQEIVQ 384
Query: 385 RAPGILGMVSPLNPTSYKPSRFLVSAPRCYCLLTKVPFFELHYEMLNSIIAQERLDRITQ 444
RAPGILGMVSPLNPTSYKPSRFLVSAPRCYCLLTKVPFFELHYEMLNSIIAQERLDRITQ
Sbjct: 385 RAPGILGMVSPLNPTSYKPSRFLVSAPRCYCLLTKVPFFELHYEMLNSIIAQERLDRITQ 444
Query: 445 FASEIALAEPIPRSMKEQSQVNGEDFESANELSYNDWTEYAVPVNXXXXXXXXXXXXXXX 504
FASEIALAEPIPRSMKEQSQVNGEDFESANELSYNDWTEYAVPVN
Sbjct: 445 FASEIALAEPIPRSMKEQSQVNGEDFESANELSYNDWTEYAVPVNSISGLISSSGLPSEG 504
Query: 505 XXXXYLFRSWEPNXXXXXXXXXXXXXXYIRELEKEGRHSFQQYEDCISENLGSRCDSFGR 564
YLFRSWEPN YIRELEKEGRHSFQQYEDCISENLGSRCDSFGR
Sbjct: 505 EIPSYLFRSWEPNSPESMSASETSDSSYIRELEKEGRHSFQQYEDCISENLGSRCDSFGR 564
Query: 565 TSYTYENGHTSPDLLSTHSPISRRIMRAQSMESLHSSVKGVGSDEEEELNMKQEIVVDDE 624
TSYTYENGHTSPDLLSTHSPISRRIMRAQSMESLHSSVKGVGSDEEEELNMKQEIVVDDE
Sbjct: 565 TSYTYENGHTSPDLLSTHSPISRRIMRAQSMESLHSSVKGVGSDEEEELNMKQEIVVDDE 624
Query: 625 KVMGWAKVHNNEPLQIVCGYHALALPPRGGELVFHPLEHLQPVKYSRPGLSLLGLGDTIS 684
KVMGWAKVHNNEPLQIVCGYHALALPPRGGELVFHPLEHLQPVKYSRPGLSLLGLGDTIS
Sbjct: 625 KVMGWAKVHNNEPLQIVCGYHALALPPRGGELVFHPLEHLQPVKYSRPGLSLLGLGDTIS 684
Query: 685 DNGLTSVEKTEVNXXXXXXXXXXXXSIWTTATICRALSLESVLELFAAALLEKQIVVICS 744
DNGLTSVEKTEVN SIWTTATICRALSLESVLELFAAALLEKQIVVICS
Sbjct: 685 DNGLTSVEKTEVNARLAAAEEAIALSIWTTATICRALSLESVLELFAAALLEKQIVVICS 744
Query: 745 NLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKLVDFLDAPVPFIAGVQHKPPDIKMKASS 804
NLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKLVDFLDAPVPFIAGVQHKPPDIKMKASS
Sbjct: 745 NLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKLVDFLDAPVPFIAGVQHKPPDIKMKASS 804
Query: 805 IVRINVDKDQVKACSLPQLPRFKELVSDLSPIHARLSCENALAKRHPIYKCNEVQAEAAW 864
IVRINVDKDQVKACSLPQLPRFKELVSDLSPIHARLSCENALAKRHPIYKCNEVQAEAAW
Sbjct: 805 IVRINVDKDQVKACSLPQLPRFKELVSDLSPIHARLSCENALAKRHPIYKCNEVQAEAAW 864
Query: 865 QFLNVMRSYLESLCSDLPSHTITNVQSNNDRVSLLLKDSFIDSFPSKDRPFVKLFVETQM 924
QFLNVMRSYLESLCSDLPSHTITNVQSNNDRVSLLLKDSFIDSFPSKDRPFVKLFVETQM
Sbjct: 865 QFLNVMRSYLESLCSDLPSHTITNVQSNNDRVSLLLKDSFIDSFPSKDRPFVKLFVETQM 924
Query: 925 FSVLSDSRLSTFENELT 941
FSVLSDSRLSTFENELT
Sbjct: 925 FSVLSDSRLSTFENELT 941
>Os02g0777100 uDENN domain containing protein
Length = 832
Score = 349 bits (895), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 171/335 (51%), Positives = 237/335 (70%), Gaps = 2/335 (0%)
Query: 607 SDEEEELNMKQEIVVDDEKVMGWAKVHNNEPLQIVCGYHALALPPRGGELVFHPLEHLQP 666
SD EE ++ +V + WAK LQ+V Y+ L P RG L FHPL+HL P
Sbjct: 498 SDLEEPSSIGHGDLVGHNNISQWAKAKKYGSLQVVSQYYQLQCPARGSSLTFHPLDHLHP 557
Query: 667 VKYSRPGLSLLGLGDTISD--NGLTSVEKTEVNXXXXXXXXXXXXSIWTTATICRALSLE 724
+++ RPG ++L + + D + TS+E E+ S W A+IC L LE
Sbjct: 558 LRFHRPGETVLHIAGSTIDLRSCDTSLEVAEMRNALFAEEESTALSTWAVASICGCLRLE 617
Query: 725 SVLELFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKLVDFLDAP 784
V+ LFAAALLEKQI+++CSNLG+LSA VLS++P+IRP+QWQSLL+PVLP ++DFLDAP
Sbjct: 618 HVMTLFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAP 677
Query: 785 VPFIAGVQHKPPDIKMKASSIVRINVDKDQVKACSLPQLPRFKELVSDLSPIHARLSCEN 844
VP+I GVQ+K D+ + + V I+ +K+Q+K+ S+PQLP+ KEL+S L P H+RL E+
Sbjct: 678 VPYIVGVQNKTSDVHSRLVNAVVIDANKNQIKSTSVPQLPQQKELLSALRPYHSRLVGES 737
Query: 845 ALAKRHPIYKCNEVQAEAAWQFLNVMRSYLESLCSDLPSHTITNVQSNNDRVSLLLKDSF 904
LA++ P+Y+C + Q EAA FL V+RSYL+SLCS+L SHTITNVQSNND+VSLLL++SF
Sbjct: 738 FLARKRPVYECTDAQVEAAKGFLAVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLRESF 797
Query: 905 IDSFPSKDRPFVKLFVETQMFSVLSDSRLSTFENE 939
I SFP+++RPF+KLFV+TQ+FSV +D LS ++ +
Sbjct: 798 IGSFPTRERPFMKLFVDTQLFSVHTDLVLSFYQKD 832
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 145/238 (60%), Gaps = 2/238 (0%)
Query: 217 NFEAMAHQKRQWYQIQSKSRDNKQYKEPTTLFEHFFVVGLHSYANVGVIEDAFAKKKAWE 276
N E + QKRQW + Q KS N+ +EP+ LFE +VGL A++ +E+ A E
Sbjct: 82 NPEVLTTQKRQWSRFQLKSLGNRCIREPSHLFESIVIVGLPPQADIHELEN-IALGSNEE 140
Query: 277 SNVEHSEIVDLRKIQYHGPIPTMEPQILFKYPPGKKAEIREIDLPSFCFPEGVKARLIER 336
+ I Q H + +EPQ+LF YPP + ++ D+ SFC P GV+ +ER
Sbjct: 141 DVKKPRNIFGNNHHQVHA-LSNLEPQVLFAYPPERPLPLKYKDILSFCLPGGVQVHAVER 199
Query: 337 TPSMSDLNEVVFGQEHLCRDDLSFIFSMKVSDNAPLYGVCLHVQEIVQRAPGILGMVSPL 396
TPS S+LNE++ GQE L + SF+F ++V+D++ LYG C+ V+EIVQR ++ M++
Sbjct: 200 TPSFSELNEILLGQEQLKESNQSFVFRLQVADDSTLYGCCVLVEEIVQRPSKLVSMLTSE 259
Query: 397 NPTSYKPSRFLVSAPRCYCLLTKVPFFELHYEMLNSIIAQERLDRITQFASEIALAEP 454
P + SR++++ PRCYC+ +++PFFELH+ +L SI+ +ERL+ +T S + P
Sbjct: 260 KPVFPRRSRYVITTPRCYCIFSRLPFFELHFGVLQSILMEERLEWLTDGVSLLTSLSP 317
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,983,615
Number of extensions: 1057696
Number of successful extensions: 2424
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2419
Number of HSP's successfully gapped: 3
Length of query: 941
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 831
Effective length of database: 11,292,261
Effective search space: 9383868891
Effective search space used: 9383868891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)