Os03g0145500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : uDENN domain containing protein.
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Os03g0145500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : uDENN domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.84 | 0.257 | 12.2 | 0.383 | 0.488 | -0.0301 | 0.235 | -3.19 | 0.257 | 8.18 | 30.3 | 270 | -- | -- |
| 30.14 | 0.256 | 12.2 | 0.643 | 0.491 | -0.323 | 0.45 | -- | 0.281 | 8.29 | 29.71 | 171 | -- | -- |
| 30 | 0.255 | 12.2 | 0.378 | 0.486 | -0.0209 | -- | -3.36 | 0.254 | 8.11 | 30.26 | 273 | -- | -- |
| 30.31 | 0.256 | 12.2 | 0.658 | 0.494 | -0.381 | -- | -- | 0.278 | 8.36 | 29.73 | 171 | -- | -- |
| 39.68 | 0.293 | 12.2 | 0.39 | -- | -0.343 | -- | -3.19 | 0.237 | -- | 29.7 | 539 | -- | -- |
| 33.56 | 0.272 | 12.2 | 0.581 | 0.581 | -- | 0.421 | -- | 0.291 | 7.69 | -- | -- | -- | -- |
| 34.06 | 0.273 | 12.2 | 0.591 | 0.582 | -- | -- | -- | 0.29 | 7.62 | -- | -- | -- | -- |
| 39.68 | 0.293 | 12.2 | 0.722 | -- | -0.612 | -- | -- | 0.342 | -- | 29.3 | 542 | -- | -- |
| 41.18 | 0.299 | 12.2 | -- | 0.519 | -0.281 | -- | -- | 0.21 | 8.07 | 29.72 | 171 | -- | -- |
| 52.26 | 0.338 | 12.2 | 0.599 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 43.28 | 0.308 | 12.2 | -- | 0.587 | -- | -- | -- | 0.224 | 7.56 | -- | -- | -- | -- |
| 51.96 | 0.336 | 12.2 | -- | -- | -0.544 | -- | -- | 0.251 | -- | 29.27 | 539 | -- | -- |
| 61.74 | 0.367 | 12.2 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.22 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 21 |
| 2 | 28.23 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 18 | 28.31 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 22 | 28.47 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 75 | 28.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 80 | 28.94 | temperature | 25 | 720 | > th | dose dependent | sin | 4 | NA |
| 81 | 28.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 117 | 29.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 138 | 29.05 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 18 |
| 139 | 29.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 148 | 29.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 152 | 29.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 157 | 29.13 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 22 |
| 158 | 29.13 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 160 | 29.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 179 | 29.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 183 | 29.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 189 | 29.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 13 |
| 204 | 29.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 214 | 29.25 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 10 |
| 261 | 29.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 262 | 29.36 | temperature | 30 | 720 | < th | dose dependent | sin | 23 | NA |
| 272 | 29.36 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 295 | 29.39 | temperature | 10 | 270 | > th | dose dependent | sin | 18 | NA |
| 323 | 29.45 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 9 |
| 337 | 29.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 338 | 29.47 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 350 | 29.50 | temperature | 10 | 90 | > th | dose dependent | sin | 16 | NA |
| 365 | 29.52 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 375 | 29.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 11 |
| 427 | 29.57 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 2 |
| 430 | 29.57 | temperature | 30 | 90 | < th | dose dependent | sin | 19 | NA |
| 437 | 29.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 478 | 29.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 488 | 29.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 497 | 29.63 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 14 | 9 |
| 521 | 29.65 | temperature | 30 | 10 | < th | dose dependent | sin | 18 | NA |
| 573 | 29.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 591 | 29.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 632 | 29.77 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 22 |
| 648 | 29.78 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 684 | 29.81 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 784 | 29.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 905 | 29.95 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 23 |
| 939 | 29.97 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |