BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0145500 Os03g0145500|AK066503
(941 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20320.1 | chr2:8767082-8772271 FORWARD LENGTH=1030 805 0.0
AT5G35560.1 | chr5:13742458-13747464 REVERSE LENGTH=766 344 1e-94
AT1G49040.1 | chr1:18139419-18148826 REVERSE LENGTH=1188 65 2e-10
>AT2G20320.1 | chr2:8767082-8772271 FORWARD LENGTH=1030
Length = 1029
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/768 (52%), Positives = 532/768 (69%), Gaps = 26/768 (3%)
Query: 175 HVRTGSFQRFRQQMQRAWKWXXXXXXXXXXXXXXXQLLRTTVNFEAMAHQKRQWYQIQS- 233
H RT SFQR + QMQ+AW+ R T N E +A+QKRQWYQ+ S
Sbjct: 281 HRRTNSFQRLKTQMQKAWRGVSNLREDN----------RPTFNPEVLANQKRQWYQLHSS 330
Query: 234 KSRDNKQYKEPTTLFEHFFVVGLHSYANVGVIEDAFAKKKAWESNVEHSEIVDLRKIQYH 293
K+ D + KEP +LFEHF +VGLH N+ +E+AF ++K WE + E+ D R +++
Sbjct: 331 KALDQTKLKEPASLFEHFIIVGLHPETNLRPVEEAFRRRKKWEMEMSRYEVADYRILRHR 390
Query: 294 GP-IPTMEPQILFKYPPGKKAEIREIDLPSFCFPEGVKARLIERTPSMSDLNEVVFGQEH 352
GP P +EPQILFKYPPGKK +R DL +FCFP GVKARL+ERTPS+SDLNE+V+GQEH
Sbjct: 391 GPQFPILEPQILFKYPPGKKVAMRPKDLATFCFPGGVKARLLERTPSLSDLNELVYGQEH 450
Query: 353 LCRDDLSFIFSMKVSDNAPLYGVCLHVQEIVQRAPGILGMVSPLNPTSYKPSRFLVSAPR 412
L DD SFIFS KV+D+A LYGVCLHV EIVQR PG+L SPL+ +S SRFLVSAPR
Sbjct: 451 LGTDDSSFIFSFKVADDATLYGVCLHVSEIVQRPPGVLSTASPLH-SSGGGSRFLVSAPR 509
Query: 413 CYCLLTKVPFFELHYEMLNSIIAQERLDRITQFASEIALAEP--IPRSMKEQSQVNGEDF 470
CYCLLT+VPFFELH+EMLNS+IAQERL RIT+F SE++LA +P + Q++
Sbjct: 510 CYCLLTRVPFFELHFEMLNSMIAQERLKRITEFVSEMSLAAACYLPSISRRNDQIDSR-- 567
Query: 471 ESANELSYNDWTEYAVPVNXXXXXXXXXXXXXXXXXXXYLFRSWEPNXXXXXXXXXXXXX 530
S+ + +DW A+PV+ EP
Sbjct: 568 VSSPRSNPDDWMASAIPVDGVMALTAAAAGLITDSDIANFA---EPQSPDSVVTSDTSDV 624
Query: 531 XYIRELEKEGRHSFQQYEDCISENLGSRCDSFGRTSYTYENGHTSPDLLSTHSPISRRIM 590
I+E+E++GR F Y++ E + D+ RTS +Y+NGHTSP++ + P ++ I
Sbjct: 625 SQIKEIERDGRKVFHCYDENSPEVFENHLDTPERTSQSYDNGHTSPEV-TCSDPRTQPIE 683
Query: 591 RAQSMESLHSSVKGVGSDEEEELNMKQEIVVDDEKVMGWAKVHNNEPLQIVCGYHALALP 650
R +S ES+ SS + V SD+ +EL+ + DD ++ WAK HNN+ LQ+VCGYH+LA+P
Sbjct: 684 RNESCESVFSSARSVLSDDVDELSNSENDFGDD-LILEWAKDHNNDSLQLVCGYHSLAIP 742
Query: 651 PRGGELVFHPLEHLQPVKYSRPGLSLLGLGDTISDNGLTSVEKTEVNXXXXXXXXXXXXS 710
RG E+VFHPLEHLQ + Y+RP +S LGL S+ + S + E+N S
Sbjct: 743 SRGSEVVFHPLEHLQSISYTRPPVSALGL----SEEYICSSDSKEINARLAAAEEAMGLS 798
Query: 711 IWTTATICRALSLESVLELFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQSLLL 770
+WTTAT+CR LSLE+++ L A LLEKQIV+IC NLGVLSAIVLS++PMIRPFQWQSLLL
Sbjct: 799 MWTTATVCRILSLETIMSLLAGVLLEKQIVIICPNLGVLSAIVLSLVPMIRPFQWQSLLL 858
Query: 771 PVLPRKLVDFLDAPVPFIAGVQHKPPDIKMKASSIVRINVDKDQVKACSLPQLPRFKELV 830
PVLP ++ DFL+APVPF+ G+ KP D K+K S+++ +N+ +QVK C++P LP+ +EL+
Sbjct: 859 PVLPGRMFDFLEAPVPFLVGIHSKPIDWKVKTSNLILVNILNNQVKICNMPALPQCRELM 918
Query: 831 SDLSPIHARLSCENALAKRHPIYKCNEVQAEAAWQFLNVMRSYLESLCSDLPSHTITNVQ 890
+ L+PIHA L+ +++ A+RHP+YKCNEVQAEAA +FL VMR Y+ESLCSDL SHTIT+VQ
Sbjct: 919 AQLAPIHATLAHQSSNARRHPVYKCNEVQAEAATKFLRVMRDYMESLCSDLHSHTITSVQ 978
Query: 891 SNNDRVSLLLKDSFIDSFPSKDRPFVKLFVETQMFSVLSDSRLSTFEN 938
SN+DRVSLLLKDSFIDSFP +DRPF+KLFV+TQ+FSVLSDSRLS+FEN
Sbjct: 979 SNSDRVSLLLKDSFIDSFPGRDRPFIKLFVDTQLFSVLSDSRLSSFEN 1026
>AT5G35560.1 | chr5:13742458-13747464 REVERSE LENGTH=766
Length = 765
Score = 344 bits (883), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 243/347 (70%), Gaps = 2/347 (0%)
Query: 590 MRAQSMESLHSSVKGVGSDEEEELNMKQEIVVDDEKVMGWAKVHNNEPLQIVCGYHALAL 649
+A E HS ++ +E Q+ + ++ WAK N LQI+C Y+ L
Sbjct: 414 FQAAPCERRHSRTSADDTETDEASFSGQDDTSSNFDILEWAKSKKNGSLQILCEYYQLKC 473
Query: 650 PPRGGELVFHPLEHLQPVKYSRPG-LSLLGLGDTISDNGL-TSVEKTEVNXXXXXXXXXX 707
P RG + FHPLEHL PV+Y RP ++L G I TS+E E +
Sbjct: 474 PARGSTITFHPLEHLHPVEYHRPNEVALHTPGSAIDLRSCSTSLELAEAHTTLMAEEEAA 533
Query: 708 XXSIWTTATICRALSLESVLELFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQS 767
S W A++C +L L++VL + A ALLEKQIV +CSNLG+L+A VLS++P+IRPF+WQS
Sbjct: 534 ALSTWAVASLCGSLRLDNVLMILAGALLEKQIVFVCSNLGILAASVLSIIPVIRPFRWQS 593
Query: 768 LLLPVLPRKLVDFLDAPVPFIAGVQHKPPDIKMKASSIVRINVDKDQVKACSLPQLPRFK 827
LL+PVLP +++FLDAPVP+I GV++K +++ K ++++ +++ K+QVK+ S+PQLP+++
Sbjct: 594 LLMPVLPDDMLEFLDAPVPYIVGVKNKTSEVQSKLTNVIVVDILKNQVKSPSMPQLPQYR 653
Query: 828 ELVSDLSPIHARLSCENALAKRHPIYKCNEVQAEAAWQFLNVMRSYLESLCSDLPSHTIT 887
+L + LSP H++L E+ LAK+ P+Y+C +VQ +AA F++V+RSYL+SLCS+L SHTIT
Sbjct: 654 DLYNALSPYHSKLVGESYLAKKRPVYECTDVQVDAAKGFMDVLRSYLDSLCSNLQSHTIT 713
Query: 888 NVQSNNDRVSLLLKDSFIDSFPSKDRPFVKLFVETQMFSVLSDSRLS 934
NVQSNND+VSLLLK+SFIDSFPS+ RPF+KLFV+TQ+FSV +D LS
Sbjct: 714 NVQSNNDKVSLLLKESFIDSFPSRQRPFMKLFVDTQLFSVHTDLVLS 760
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 166/286 (58%), Gaps = 27/286 (9%)
Query: 217 NFEAMAHQKRQWYQIQSKSRDNKQYKEPTTLFEHFFVVGLHSYANVGVIEDAF-AKKKAW 275
N E + QKRQW + Q D+K K+P+ LFE VVGLH ++ +E + A+K
Sbjct: 82 NPEVLTSQKRQWAKFQ----DHKPLKDPSRLFESVVVVGLHPNCDIQALERQYIARKSEG 137
Query: 276 ESNVEHSEIVDLRKIQYHGPI-PTMEPQILFKYPPGKKAEIREIDLPSFCFPEGVKARLI 334
S S +V Q H + P++EPQ+L YPP K+ I+ DL SFCFP G++ +
Sbjct: 138 SSGRLRSALVS----QNHSRVEPSLEPQVLLVYPPDKQPPIKYKDLHSFCFPGGIEVHAV 193
Query: 335 ERTPSMSDLNEVVFGQEHLCRDDLSFIFSMKVSDNAPLYGVCLHVQEIVQRAPGILGMVS 394
ERTPSMS+L+E++ QEHL DLSF+F ++V+DN+ LYG CL V+EIV + +L V
Sbjct: 194 ERTPSMSELSEIILSQEHLRPSDLSFVFRLQVADNSTLYGCCLLVEEIVNKPSRLLSTVL 253
Query: 395 PLNPTSYKPSRFLVSAPRCYCLLTKVPFFELHYEMLNSIIAQERLDRI------------ 442
P SR++++ RCYC+LT++PFFELH+ +LNSI +ERL+ +
Sbjct: 254 DKQPACSSLSRYVMTTRRCYCVLTRLPFFELHFGVLNSIFLEERLEHLMSGISCASLEPP 313
Query: 443 TQFASEIALAEPIPR-----SMKEQSQVNGEDFESANELSYNDWTE 483
T F++E +L + P+ KEQ+ G A+E+S N E
Sbjct: 314 TDFSNEDSLNDSSPQQRDSGDTKEQTVEAGSKLPKADEISDNGTCE 359
>AT1G49040.1 | chr1:18139419-18148826 REVERSE LENGTH=1188
Length = 1187
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 717 ICRALSLESVLELFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRK 776
+ + L ++++++LF + L+E++I++ + +L+ + S+ +I PF+W + +P+L
Sbjct: 210 LVQCLDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFS 269
Query: 777 LVDFLDAPVPFIAGVQHKPPDIKMKASSIVRINVDKDQVKAC-SLPQL--PRFKELVSDL 833
VD++DAP P++ G+ + +V +++D +Q+ +PQ+ P F L +D+
Sbjct: 270 GVDYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSEEIPQIPEPEFSTLRNDI 329
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,290,286
Number of extensions: 690384
Number of successful extensions: 1813
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1803
Number of HSP's successfully gapped: 5
Length of query: 941
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 833
Effective length of database: 8,145,641
Effective search space: 6785318953
Effective search space used: 6785318953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)