BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0143600 Os03g0143600|AK068424
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0143600 Similar to Inhibitor of growth protein 1. Spli... 414 e-116
Os03g0748200 Similar to Inhibitor of growth protein 3 (p47I... 88 6e-18
Os01g0944033 76 2e-14
>Os03g0143600 Similar to Inhibitor of growth protein 1. Splice isoform 2
Length = 253
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/253 (80%), Positives = 203/253 (80%)
Query: 1 MGFLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSIT 60
MGFLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSIT
Sbjct: 1 MGFLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSIT 60
Query: 61 YDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLEELRQEKEX 120
YDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLEELRQEKE
Sbjct: 61 YDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLEELRQEKEA 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTPXXXXXXXXXXXXXXXTAKVPTE 180
DNTP TAKVPTE
Sbjct: 121 ATTAAAAAAAAAASVATGTPVAATVTASAGTSTADNTPKGGRSSERGRGGRKKTAKVPTE 180
Query: 181 QPAPAIDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCKIEWYHFGCVGVKEHPKGKWYC 240
QPAPAIDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCKIEWYHFGCVGVKEHPKGKWYC
Sbjct: 181 QPAPAIDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCKIEWYHFGCVGVKEHPKGKWYC 240
Query: 241 PSCIGFQKKRKGK 253
PSCIGFQKKRKGK
Sbjct: 241 PSCIGFQKKRKGK 253
>Os03g0748200 Similar to Inhibitor of growth protein 3 (p47ING3 protein)
Length = 253
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 50/61 (81%), Gaps = 3/61 (4%)
Query: 186 IDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCK-IEWYHFGCVGVKEHP--KGKWYCPS 242
+D++ +DPNEPTYC+C+Q+SYG+M+ACDN++C+ EW+H+ CVG+ KGKW+CP+
Sbjct: 190 MDVDQTIDPNEPTYCICHQISYGDMIACDNDNCEGGEWFHYTCVGLTPETRFKGKWFCPT 249
Query: 243 C 243
C
Sbjct: 250 C 250
>Os01g0944033
Length = 138
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 36/38 (94%)
Query: 34 GVQTGNEQRCQQEIEDIKHGLESGSITYDPAKLKFSDE 71
GVQ GNEQRCQ+EIED KHGLESGSITYDPAKLKFSD+
Sbjct: 84 GVQMGNEQRCQKEIEDTKHGLESGSITYDPAKLKFSDD 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,980,805
Number of extensions: 258411
Number of successful extensions: 778
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 3
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)