BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0136600 Os03g0136600|AK062705
         (159 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0136600  Complex 1 LYR protein family protein                197   3e-51
Os03g0643900  Conserved hypothetical protein                       64   4e-11

>Os03g0136600 Complex 1 LYR protein family protein
          Length = 159

 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 108/143 (75%)

Query: 17  VLRRRPPVRSIHEGPDTIDELLDRHXXXXXXXXXXXXXXXXXXXXEARRRLTSSRREALG 76
           VLRRRPPVRSIHEGPDTIDELLDRH                    EARRRLTSSRREALG
Sbjct: 17  VLRRRPPVRSIHEGPDTIDELLDRHLAKKSPSSSSGALDGDAADAEARRRLTSSRREALG 76

Query: 77  LYRDILRVTRLFEWPDDRGVPWREVLXXXXXXXXXXXXXXXDPEVVARLLIGGRDAVQQA 136
           LYRDILRVTRLFEWPDDRGVPWREVL               DPEVVARLLIGGRDAVQQA
Sbjct: 77  LYRDILRVTRLFEWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQA 136

Query: 137 LDRLAEASRRMVEAEEAKRRGGA 159
           LDRLAEASRRMVEAEEAKRRGGA
Sbjct: 137 LDRLAEASRRMVEAEEAKRRGGA 159



>Os03g0643900 Conserved hypothetical protein
          Length = 257

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 32/34 (94%)

Query: 62  EARRRLTSSRREALGLYRDILRVTRLFEWPDDRG 95
           EARRRLTSS REALGLYRDILRVT LFEWPDDRG
Sbjct: 108 EARRRLTSSLREALGLYRDILRVTWLFEWPDDRG 141



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,726,255
Number of extensions: 97204
Number of successful extensions: 240
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)