Os03g0643900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0643900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.33 | 0.636 | 3.9 | 1.12 | 1.18 | 1.39 | 1.18 | -0.0129 | 0.408 | 0.362 | 24.11 | 1093 | -- | -- |
| 183.32 | 0.631 | 3.9 | 1.12 | 1.19 | 1.39 | 1.18 | -- | 0.407 | 0.353 | 24.06 | 1083 | -- | -- |
| 189.12 | 0.64 | 3.9 | 1.14 | 1.16 | 1.4 | -- | -0.202 | 0.407 | 0.292 | 24 | 1080 | -- | -- |
| 189.3 | 0.641 | 3.9 | 1.08 | 1.18 | 1.42 | -- | -- | 0.402 | 0.29 | 23.91 | 1072 | -- | -- |
| 238.74 | 0.724 | 3.89 | 0.85 | -- | 1.67 | -- | 1.42 | 0.409 | -- | 25.1 | 1611 | -- | -- |
| 209.4 | 0.678 | 3.96 | 0.718 | 1.06 | -- | 1.25 | -- | 0.138 | 0.365 | -- | -- | -- | -- |
| 216.1 | 0.688 | 3.96 | 0.67 | 1.05 | -- | -- | -- | 0.133 | 0.275 | -- | -- | -- | -- |
| 241.28 | 0.727 | 3.87 | 1.06 | -- | 1.59 | -- | -- | 0.462 | -- | 25.23 | 1618 | -- | -- |
| 215.66 | 0.684 | 3.95 | -- | 1.15 | 0.89 | -- | -- | 0.215 | 0.186 | 24.09 | 983 | -- | -- |
| 285.73 | 0.79 | 3.94 | 0.705 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 227.94 | 0.706 | 3.98 | -- | 1.06 | -- | -- | -- | 0.058 | 0.309 | -- | -- | -- | -- |
| 262.98 | 0.758 | 3.9 | -- | -- | 1.34 | -- | -- | 0.318 | -- | 26 | 1609 | -- | -- |
| 298.84 | 0.807 | 3.96 | -- | -- | -- | -- | -- | 0.0708 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 6 |
| 6 | 170.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 11 | 170.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 14 | 171.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 22 | 171.86 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 35 | 172.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 80 | 174.27 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 83 | 174.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 178 | 176.68 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 193 | 176.97 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 203 | 177.08 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 234 | 177.64 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 6 |
| 235 | 177.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 255 | 177.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 261 | 178.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 279 | 178.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 294 | 178.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 319 | 178.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 330 | 178.84 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 338 | 178.92 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 3 |
| 362 | 179.14 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 10 |
| 532 | 179.99 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 535 | 180.00 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 9 |
| 698 | 180.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 24 | 18 |
| 707 | 180.79 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 9 |
| 727 | 180.88 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 11 |
| 743 | 180.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 777 | 181.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 809 | 181.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 826 | 181.28 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 902 | 181.57 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 1 |
| 909 | 181.59 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 11 |
| 940 | 181.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 952 | 181.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 960 | 181.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 968 | 181.81 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 992 | 181.87 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |