Os03g0136600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Complex 1 LYR protein family protein.
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Os03g0136600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Complex 1 LYR protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.28 | 0.418 | 8.75 | -1.65 | 0.959 | -1.28 | -0.675 | 0.93 | -0.643 | 3.97 | 23.8 | 735 | -- | -- |
| 80.45 | 0.418 | 8.74 | -1.52 | 0.959 | -1.38 | -0.702 | -- | -0.628 | 3.94 | 23.67 | 756 | -- | -- |
| 80.52 | 0.418 | 8.75 | -1.66 | 0.947 | -1.28 | -- | 0.999 | -0.641 | 3.97 | 23.7 | 769 | -- | -- |
| 81.74 | 0.421 | 8.73 | -1.51 | 0.946 | -1.45 | -- | -- | -0.613 | 4.01 | 23.39 | 769 | -- | -- |
| 124.63 | 0.52 | 8.77 | -1.74 | -- | -1.46 | -- | 1.08 | -0.708 | -- | 25.3 | 1027 | -- | -- |
| 107.26 | 0.486 | 8.68 | -1.14 | 0.983 | -- | -0.79 | -- | -0.364 | 3.35 | -- | -- | -- | -- |
| 109.24 | 0.489 | 8.68 | -1.12 | 0.98 | -- | -- | -- | -0.359 | 3.39 | -- | -- | -- | -- |
| 126.04 | 0.523 | 8.75 | -1.53 | -- | -1.55 | -- | -- | -0.668 | -- | 25.1 | 1028 | -- | -- |
| 134.14 | 0.539 | 8.68 | -- | 0.97 | -0.744 | -- | -- | -0.352 | 3.73 | 23.8 | 608 | -- | -- |
| 163.31 | 0.597 | 8.68 | -1.08 | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
| 142.52 | 0.558 | 8.65 | -- | 0.958 | -- | -- | -- | -0.234 | 3.39 | -- | -- | -- | -- |
| 180.62 | 0.626 | 8.69 | -- | -- | -0.871 | -- | -- | -0.372 | -- | 25.2 | 985 | -- | -- |
| 194.21 | 0.65 | 8.65 | -- | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 3 | 79.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 4 | 79.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 40 | 79.86 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 57 | 80.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 60 | 80.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 63 | 80.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 103 | 81.04 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 114 | 81.31 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 126 | 81.51 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 142 | 81.72 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 143 | 81.72 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 156 | 81.89 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 158 | 81.91 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 160 | 81.93 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 161 | 81.96 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 162 | 81.97 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 21 |
| 183 | 82.12 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 188 | 82.15 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 203 | 82.22 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 205 | 82.22 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 230 | 82.40 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 247 | 82.48 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 249 | 82.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 254 | 82.51 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 256 | 82.53 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 267 | 82.57 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 270 | 82.58 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 276 | 82.62 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 280 | 82.65 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 282 | 82.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 290 | 82.68 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 294 | 82.70 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 301 | 82.72 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 317 | 82.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 321 | 82.82 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 329 | 82.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 338 | 82.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 351 | 82.95 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 393 | 83.19 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 516 | 83.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 656 | 84.26 | wind | 7 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 751 | 84.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 769 | 84.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 804 | 84.47 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 906 | 84.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 909 | 84.59 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 994 | 84.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 997 | 84.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 4 |