BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0136600 Os03g0136600|AK062705
         (159 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76060.1  | chr1:28543367-28543840 REVERSE LENGTH=158          114   2e-26

>AT1G76060.1 | chr1:28543367-28543840 REVERSE LENGTH=158
          Length = 157

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 76/133 (57%), Gaps = 7/133 (5%)

Query: 25  RSIHEGPDTIDELLDRHXXXXXXXXXXXXXXXXXXXXEARRRLTSSRREALGLYRDILRV 84
           R +HEGPDT++ELL+RH                      RRRLTS+RREAL LYRDILR 
Sbjct: 29  RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLN----RRRLTSTRREALSLYRDILRA 84

Query: 85  TRLFEWPDDRGVPWREVLXXXXXXXXXXXXXXXDPEVVARLLIGGRDAVQQALDRLAEAS 144
           TR F W D RG  WR+VL               DPEV+ RLLIGG DAV  ALD+LAE  
Sbjct: 85  TRFFTWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQ 144

Query: 145 RRMVEAEEAKRRG 157
           R M+E +   RRG
Sbjct: 145 REMIEKQ---RRG 154



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,042,254
Number of extensions: 48137
Number of successful extensions: 110
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)