BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0134000 Os03g0134000|Os03g0134000
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0134000                                                      444   e-125
Os09g0526400                                                      404   e-113
Os04g0253700                                                      399   e-111
Os10g0154200  Hypothetical protein                                 86   2e-17

>Os03g0134000 
          Length = 230

 Score =  444 bits (1141), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/230 (93%), Positives = 216/230 (93%)

Query: 1   MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM 60
           MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM
Sbjct: 1   MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM 60

Query: 61  TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKP 120
           TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKP
Sbjct: 61  TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKP 120

Query: 121 AESYVDRXXXXXXXXXXXXXXDLGVPSIAEGSVISAKPTGQSIARCGVINSDSIDICSPV 180
           AESYVDR              DLGVPSIAEGSVISAKPTGQSIARCGVINSDSIDICSPV
Sbjct: 121 AESYVDRVESTTQVVTSVLSVDLGVPSIAEGSVISAKPTGQSIARCGVINSDSIDICSPV 180

Query: 181 QMTNEEDTGDTCNHAPNVEDSAALVDWRRGTRKQQQRWEGRNQRVLVMNK 230
           QMTNEEDTGDTCNHAPNVEDSAALVDWRRGTRKQQQRWEGRNQRVLVMNK
Sbjct: 181 QMTNEEDTGDTCNHAPNVEDSAALVDWRRGTRKQQQRWEGRNQRVLVMNK 230



>Os09g0526400 
          Length = 395

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/209 (92%), Positives = 194/209 (92%)

Query: 1   MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM 60
           MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM
Sbjct: 1   MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM 60

Query: 61  TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKP 120
           TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKP
Sbjct: 61  TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKP 120

Query: 121 AESYVDRXXXXXXXXXXXXXXDLGVPSIAEGSVISAKPTGQSIARCGVINSDSIDICSPV 180
           AESYVDR              DLGVPSIAEGSVISAKPTGQSIARCGVINSDSIDICSPV
Sbjct: 121 AESYVDRVESTTQVVTSVLSVDLGVPSIAEGSVISAKPTGQSIARCGVINSDSIDICSPV 180

Query: 181 QMTNEEDTGDTCNHAPNVEDSAALVDWRR 209
           QMTNEEDTGDTCNHAPNVEDSAALVDW +
Sbjct: 181 QMTNEEDTGDTCNHAPNVEDSAALVDWSK 209



>Os04g0253700 
          Length = 429

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/209 (90%), Positives = 191/209 (91%)

Query: 1   MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM 60
           MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM
Sbjct: 1   MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDM 60

Query: 61  TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKP 120
           TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYK 
Sbjct: 61  TSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKT 120

Query: 121 AESYVDRXXXXXXXXXXXXXXDLGVPSIAEGSVISAKPTGQSIARCGVINSDSIDICSPV 180
           AESYVDR              DL VPSIAEG VISAKPTGQSIARCGVINSDSIDICSPV
Sbjct: 121 AESYVDRVESTTQVVTSVLSVDLDVPSIAEGGVISAKPTGQSIARCGVINSDSIDICSPV 180

Query: 181 QMTNEEDTGDTCNHAPNVEDSAALVDWRR 209
           QMTNEEDTGDTCNHAPNVEDSAALVDW +
Sbjct: 181 QMTNEEDTGDTCNHAPNVEDSAALVDWSK 209



>Os10g0154200 Hypothetical protein
          Length = 73

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 45/58 (77%)

Query: 10 IDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDMTSKVIWG 67
          IDPGNA R+VVK A YVA+LEY +L M+EQ  D WVD+CKGYSL    DDM SK+IWG
Sbjct: 16 IDPGNAFRIVVKGAKYVADLEYEMLEMAEQRFDLWVDRCKGYSLANLRDDMASKIIWG 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,291,664
Number of extensions: 323404
Number of successful extensions: 706
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 4
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)