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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0154200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0248) R2 : 0.0024
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0547 (0.0521) R2dN8 : 0.0031 R2N8 : 0.0024
σ : 0.466
deviance : 99.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.13 0.458 3.56 1.72 0.114 61.6 0.209 128 0.0734 6.76 14.98 826 -- --
98.51 0.466 2.78 0.0162 0.113 0.529 0.222 -- 0.0585 6.75 14.98 826 -- --
95.22 0.454 3.56 1.73 0.116 61.6 -- 128 0.0733 7.48 14.99 826 -- --
96.87 0.458 2.8 0.068 0.101 0.797 -- -- 0.0448 6.87 14.67 1109 -- --
95.93 0.456 3.57 1.73 -- 61.7 -- 128 0.075 -- 14.99 825 -- --
99.06 0.467 2.78 -0.00402 0.11 -- 0.254 -- 0.0534 6.62 -- -- -- --
99.18 0.466 2.78 0.00078 0.113 -- -- -- 0.0532 7.51 -- -- -- --
97.37 0.46 2.78 0.0967 -- 1.02 -- -- 0.0715 -- 14.7 1109 -- --
96.76 0.458 2.78 -- 0.116 0.952 -- -- 0.0454 7.52 14.7 1109 -- --
99.86 0.467 2.79 0.00249 -- -- -- -- 0.0549 -- -- -- -- --
99.18 0.466 2.78 -- 0.113 -- -- -- 0.0531 7.51 -- -- -- --
97.53 0.46 2.78 -- -- 0.938 -- -- 0.0657 -- 14.68 1109 -- --
99.86 0.466 2.79 -- -- -- -- -- 0.0547 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.26 temperature 20.0 30 > th dose dependent rect. 2 1
2 88.27 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 88.29 atmosphere 1005.0 30 > th dose independent rect. 2 1
5 88.30 temperature 20.0 30 > th dose independent rect. 2 1
8 88.33 wind 3.0 30 < th dose dependent rect. 2 1
11 88.36 wind 3.0 30 < th dose independent rect. 2 1
12 88.37 temperature 25.0 30 < th dose independent rect. 2 1
16 88.38 humidity 80.0 30 > th dose independent rect. 2 1
17 88.40 humidity 50.0 30 > th dose dependent rect. 2 1
21 88.41 temperature 10.0 30 > th dose independent rect. 2 1
24 88.41 humidity 50.0 30 > th dose independent rect. 2 1
28 88.41 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 88.41 radiation 1.0 30 < th dose independent rect. 2 1
35 88.41 precipitation 0.1 30 < th dose independent rect. 2 1
36 88.41 temperature 10.0 30 > th dose independent rect. 3 23
39 88.41 radiation 1.0 30 < th dose dependent rect. 2 1
44 88.41 precipitation 0.1 30 < th dose dependent rect. 2 1
46 88.46 wind 9.0 30 < th dose independent rect. 3 23
50 88.68 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 88.69 temperature 30.0 30 < th dose dependent rect. 2 1
55 88.97 wind 1.0 30 > th dose independent rect. 2 1
103 89.81 humidity 90.0 90 < th dose independent rect. 2 1
111 90.70 precipitation 0.1 30 < th dose independent rect. 3 23
112 90.70 precipitation 0.1 30 < th dose dependent rect. 3 23
113 90.72 temperature 30.0 90 > th dose dependent rect. 8 1
128 90.88 temperature 30.0 90 > th dose independent rect. 8 1
165 92.16 humidity 90.0 90 > th dose independent rect. 14 3
227 92.66 atmosphere 995.0 30 > th dose independent rect. 3 23
245 92.76 wind 1.0 30 < th dose independent rect. 15 3
249 92.76 wind 1.0 30 < th dose dependent rect. 15 3
263 92.84 wind 1.0 30 < th dose independent rect. 15 1
264 92.84 humidity 90.0 90 > th dose independent rect. 14 1
271 92.84 wind 1.0 30 < th dose dependent rect. 15 1
272 92.84 humidity 90.0 90 > th dose dependent rect. 14 1
282 93.02 precipitation 0.1 90 > th dose independent rect. 14 1
285 93.02 precipitation 0.1 90 > th dose dependent rect. 14 1
306 93.18 humidity 90.0 90 < th dose dependent rect. 2 1
353 93.53 radiation 1.0 43200 < th dose dependent rect. 3 1
361 93.62 humidity 90.0 90 < th dose independent rect. 1 3
364 93.69 temperature 30.0 10 > th dose independent rect. 9 1
424 93.71 wind 9.0 4320 < th dose independent rect. 3 1
428 93.73 humidity 90.0 10 < th dose dependent rect. 3 1
433 93.79 radiation 1.0 4320 < th dose dependent rect. 3 1
437 93.81 temperature 10.0 1440 > th dose independent rect. 3 1
440 93.81 temperature 30.0 1440 < th dose independent rect. 3 1
444 93.81 humidity 50.0 1440 > th dose independent rect. 3 1
453 93.81 atmosphere 995.0 1440 > th dose independent rect. 3 1
454 93.81 radiation 1.0 1440 < th dose independent rect. 3 1
474 93.81 temperature 10.0 1440 > th dose independent rect. 4 23
499 93.88 radiation 40.0 90 > th dose independent rect. 8 1
535 93.93 humidity 80.0 10 < th dose independent rect. 3 1
569 94.08 humidity 50.0 30 > th dose independent rect. 3 23
589 94.24 wind 1.0 90 > th dose dependent rect. 2 1
592 94.28 atmosphere 1015.0 30 < th dose independent rect. 3 23
604 94.44 temperature 10.0 30 > th dose dependent rect. 3 23
606 94.46 humidity 80.0 30 < th dose independent rect. 21 8
616 94.52 wind 1.0 10 > th dose independent rect. 10 23
617 94.53 atmosphere 1005.0 270 > th dose dependent rect. 23 4
619 94.54 temperature 25.0 10 < th dose dependent rect. 8 3
623 94.56 wind 1.0 30 < th dose independent rect. 15 12
629 94.57 temperature 20.0 270 > th dose independent rect. 3 20
631 94.58 atmosphere 1015.0 4320 > th dose dependent rect. 14 6
646 94.68 atmosphere 1015.0 4320 > th dose independent rect. 18 1
657 94.68 atmosphere 1015.0 4320 > th dose dependent rect. 18 1
704 94.89 atmosphere 1015.0 4320 > th dose independent rect. 15 1
705 94.89 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
707 94.91 atmosphere 1015.0 4320 > th dose independent rect. 15 5
710 94.92 temperature 15.0 1440 > th dose independent rect. 11 16
726 94.97 humidity 90.0 720 < th dose independent rect. 10 5
733 95.00 temperature 15.0 720 < th dose independent sin 3 NA
734 95.00 temperature 15.0 720 < th dose independent rect. 1 17
736 95.01 temperature 15.0 720 < th dose independent sin 9 NA
738 95.01 temperature 15.0 720 < th dose independent rect. 20 9
757 95.03 temperature 15.0 1440 > th dose independent rect. 17 10
786 95.05 temperature 15.0 720 < th dose independent rect. 2 13
829 95.11 temperature 15.0 720 < th dose dependent rect. 2 16
837 95.12 temperature 15.0 720 < th dose dependent sin 3 NA
838 95.12 humidity 80.0 10 < th dose dependent rect. 21 8
864 95.13 humidity 80.0 270 < th dose dependent rect. 24 1
902 95.17 temperature 20.0 90 < th dose independent rect. 8 6
903 95.17 temperature 20.0 90 < th dose independent rect. 8 10
913 95.17 temperature 15.0 720 < th dose dependent rect. 2 13
948 95.21 temperature 15.0 720 > th dose independent sin 13 NA
958 95.21 humidity 80.0 90 < th dose dependent rect. 21 7
972 95.23 temperature 20.0 1440 > th dose independent rect. 18 1
987 95.24 temperature 30.0 30 < th dose independent rect. 3 23