BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0131300 Os03g0131300|AK100656
(534 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0131300 Ubiquitin domain containing protein 762 0.0
Os10g0542200 Ubiquitin domain containing protein 469 e-132
>Os03g0131300 Ubiquitin domain containing protein
Length = 534
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/534 (74%), Positives = 400/534 (74%)
Query: 1 MSGGDGEEXXXXXXXXTLHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIY 60
MSGGDGEE TLHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIY
Sbjct: 1 MSGGDGEEAAAAAAAATLHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIY 60
Query: 61 KGRILKDEQTLASYGVETDHTIHMVRGXXXXXXXXXXXXXXXXXXXXXXXXXSNSPAVXX 120
KGRILKDEQTLASYGVETDHTIHMVRG SNSPAV
Sbjct: 61 KGRILKDEQTLASYGVETDHTIHMVRGAAPPPASTAPPAANNVTPAINATTASNSPAVGF 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXPELSQMQQQLSENPTLMREIMNMPLMQNILNSPDL 180
PELSQMQQQLSENPTLMREIMNMPLMQNILNSPDL
Sbjct: 121 GGLLHGLGGSGSANSGGLGSFGSGLPELSQMQQQLSENPTLMREIMNMPLMQNILNSPDL 180
Query: 181 IRNIIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIES 240
IRNIIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIES
Sbjct: 181 IRNIIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIES 240
Query: 241 SPEGFNMLRRMYETVQEPFLNATTMAGEGDRSSNPFSALLGNHGSNQARDXXXXXXXXXX 300
SPEGFNMLRRMYETVQEPFLNATTMAGEGDRSSNPFSALLGNHGSNQARD
Sbjct: 241 SPEGFNMLRRMYETVQEPFLNATTMAGEGDRSSNPFSALLGNHGSNQARDPAANSPTTTS 300
Query: 301 XXXXXXXXXNTNPLPNPWSTTAGAAQGATRPSPVTNARSATAXXXXXXXXXXXXXXXXXX 360
NTNPLPNPWSTTAGAAQGATRPSPVTNARSATA
Sbjct: 301 ESTTGSPAPNTNPLPNPWSTTAGAAQGATRPSPVTNARSATAGGLGGLSSTDLGGMLGGG 360
Query: 361 XXXXFLSQVLQNPTMMQMMQNIMSNPQSMNQLLNINPNVRNMMESNTQLREMFQNPEFVR 420
FLSQVLQNPTMMQMMQNIMSNPQSMNQLLNINPNVRNMMESNTQLREMFQNPEFVR
Sbjct: 361 SDTSFLSQVLQNPTMMQMMQNIMSNPQSMNQLLNINPNVRNMMESNTQLREMFQNPEFVR 420
Query: 421 QLTSPETLQQLISFXXXXXXXXXXXXAGPERTQSXXXXXXXXXXXXMSMFSXXXXXXXXX 480
QLTSPETLQQLISF AGPERTQS MSMFS
Sbjct: 421 QLTSPETLQQLISFQQSLMSQLGQQQAGPERTQSGAGAGNTNLNNLMSMFSGLGAGGGLG 480
Query: 481 VPSAPNVPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG 534
VPSAPNVPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG
Sbjct: 481 VPSAPNVPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG 534
>Os10g0542200 Ubiquitin domain containing protein
Length = 575
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 253/419 (60%), Positives = 282/419 (67%), Gaps = 30/419 (7%)
Query: 146 PELSQMQQQLSENPTLMREIMNMPLMQNILNSPDLIRNIIMNNPQMREIVDRNPDLAHVL 205
PEL QMQQQLS+NP LMREIMNMP+MQN++N+PDLIRN+IMNNPQMR+I+DRNPDLAHVL
Sbjct: 156 PELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVL 215
Query: 206 NDPSILRQTVEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTM 265
NDPS+LRQT+EAARNPE+MREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTM
Sbjct: 216 NDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTM 275
Query: 266 AGEGDRSSNPFSALLGNHGSNQARDXXXXXXXXXXXXXXXXXXXNTNPLPNPWSTTAGAA 325
GEG+ + NPFSALLGN GSNQ RD NTNPLPNPWS+ AG A
Sbjct: 276 GGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGA 335
Query: 326 QGATRPSPVTNARSATAXXXXXXXXXXXX---------------------------XXXX 358
QGATR NAR+
Sbjct: 336 QGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLG 395
Query: 359 XXXXXXFLSQVLQNPTMMQMMQNIMSNPQSMNQLLNINPNVRNMMESNTQLREMFQNPEF 418
LSQ+LQNP MMQMMQNIMS+PQSMNQLLN NPN RN+MESNTQLREMFQNPEF
Sbjct: 396 GSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEF 455
Query: 419 VRQLTSPETLQQLISFXXXXXXXXXXXXA---GPERTQSXXXXXXXXXXXXMSMFSXXXX 475
+RQLTSPET+QQL+SF G + + M M S
Sbjct: 456 IRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGA 515
Query: 476 XXXXXVPSAPNVPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG 534
VP+ NVPPEELYATQL QL+EMGF DT ENI+AL+ATAGNV+AAVERLLGN+G
Sbjct: 516 GGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQALVATAGNVNAAVERLLGNLG 574
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 60/69 (86%)
Query: 18 LHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVE 77
LHIRC NGSK VRADL +VGAFK +VA SCDVPA QQRLIYKGRILKDEQTL SYGVE
Sbjct: 32 LHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVE 91
Query: 78 TDHTIHMVR 86
TDHTIHMVR
Sbjct: 92 TDHTIHMVR 100
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,505,384
Number of extensions: 386562
Number of successful extensions: 1233
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 4
Length of query: 534
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 428
Effective length of database: 11,501,117
Effective search space: 4922478076
Effective search space used: 4922478076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)