BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0126300 Os03g0126300|AY346336
         (346 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0126300  SAM (and some other nucleotide) binding motif ...   608   e-174
Os02g0489500  Conserved hypothetical protein                      135   4e-32

>Os03g0126300 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 346

 Score =  608 bits (1568), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/346 (87%), Positives = 304/346 (87%)

Query: 1   MATMPLTFSXXXXXXXXXXXEAKPQRRSATRVSLLPRRGAASARRPLYCAPGGGGEVSAP 60
           MATMPLTFS           EAKPQRRSATRVSLLPRRGAASARRPLYCAPGGGGEVSAP
Sbjct: 1   MATMPLTFSPPRLLHRHRRREAKPQRRSATRVSLLPRRGAASARRPLYCAPGGGGEVSAP 60

Query: 61  PXXXXXXXXXXXXXXXYTLLAITGSDFNEVIMIIDSPATRYLLLDTNRNVHSVLPKTGVW 120
           P               YTLLAITGSDFNEVIMIIDSPATRYLLLDTNRNVHSVLPKTGVW
Sbjct: 61  PATEQQEQAAKEEEEEYTLLAITGSDFNEVIMIIDSPATRYLLLDTNRNVHSVLPKTGVW 120

Query: 121 TNSYWDEFVSLPAVVPRXXXXXXXXXXXXXXXXMLKFYPWLQLVGWEIDPKIIELSRDYF 180
           TNSYWDEFVSLPAVVPR                MLKFYPWLQLVGWEIDPKIIELSRDYF
Sbjct: 121 TNSYWDEFVSLPAVVPRGPVALLGLGAGTAAHLMLKFYPWLQLVGWEIDPKIIELSRDYF 180

Query: 181 GLSDLEKATESGGSLSVRIGDALSPSATIEGGFAGIVVDLFADGKIIPQLQEVETWLEIA 240
           GLSDLEKATESGGSLSVRIGDALSPSATIEGGFAGIVVDLFADGKIIPQLQEVETWLEIA
Sbjct: 181 GLSDLEKATESGGSLSVRIGDALSPSATIEGGFAGIVVDLFADGKIIPQLQEVETWLEIA 240

Query: 241 KKLMPDGRIIVNCGGADAAVSLANDTGLSSWVQNSTIKALCAAFPGQAYASDATLKCSRN 300
           KKLMPDGRIIVNCGGADAAVSLANDTGLSSWVQNSTIKALCAAFPGQAYASDATLKCSRN
Sbjct: 241 KKLMPDGRIIVNCGGADAAVSLANDTGLSSWVQNSTIKALCAAFPGQAYASDATLKCSRN 300

Query: 301 RSASCPVAFTDKYCSLVAFTDRCMDGTSPFMRALKKATMLYCCLCD 346
           RSASCPVAFTDKYCSLVAFTDRCMDGTSPFMRALKKATMLYCCLCD
Sbjct: 301 RSASCPVAFTDKYCSLVAFTDRCMDGTSPFMRALKKATMLYCCLCD 346



>Os02g0489500 Conserved hypothetical protein
          Length = 323

 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 115/193 (59%), Gaps = 12/193 (6%)

Query: 100 RYLLLDTNRNVHSV-LPKTGV-WTNSYWDEFVSLPAVVPRXXXXXXXXX--XXXXXXXML 155
           R LLLD   N+HS+  P++    T++Y D F +LP ++P                   +L
Sbjct: 83  RLLLLDAPGNIHSLSFPRSPCPLTSTYLDVFATLPPLLPASASSLAVLGFGAGSAARAVL 142

Query: 156 KFYPWLQLVGWEIDPKIIELSRDYFGLSDLEKATESGGSLSVRIGDALSPSA---TIEGG 212
            F+P + + GWEIDP ++  SRD+FGL++LE   E    LS+ +GDAL  SA    + GG
Sbjct: 143 HFFPDISVHGWEIDPAVVSASRDFFGLAELE--AEHAARLSIHVGDALEASADAVAVPGG 200

Query: 213 FAGIVVDLFADGKIIPQLQEVETWLEIAKKLM-PDGRIIVNCGGADAAVSLANDTGLSSW 271
           F G++VDLFA G ++P+LQE++TW  I ++++ P GR++VNCGG    V    +      
Sbjct: 201 FGGVLVDLFAGGSVLPELQEMDTWRRIGRRMVAPGGRVMVNCGG--PCVEAEEEGRGGEA 258

Query: 272 VQNSTIKALCAAF 284
           V+++T++AL AAF
Sbjct: 259 VKDATLRALTAAF 271



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,292,555
Number of extensions: 449714
Number of successful extensions: 1221
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1216
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)