Os02g0489500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0489500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.6 | 0.4 | 9.79 | 1.72 | 1.02 | -1.09 | -1.3 | 2.42 | -0.137 | 20.1 | 19.49 | 1748 | -- | -- |
| 78.41 | 0.412 | 9.82 | 1.77 | 0.989 | -1.69 | -1.37 | -- | -0.116 | 20.3 | 18.4 | 4375 | -- | -- |
| 77.32 | 0.41 | 9.79 | 1.75 | 1.02 | -1.14 | -- | 2.48 | -0.14 | 20 | 19.39 | 1662 | -- | -- |
| 80.52 | 0.418 | 9.82 | 1.77 | 0.929 | -1.89 | -- | -- | -0.0973 | 20.1 | 18.4 | 3108 | -- | -- |
| 132.95 | 0.537 | 9.77 | 1.7 | -- | -1.18 | -- | 2.49 | -0.167 | -- | 19.1 | 1627 | -- | -- |
| 117.65 | 0.509 | 9.91 | 0.801 | 1.02 | -- | -1.44 | -- | -0.475 | 20.2 | -- | -- | -- | -- |
| 123.88 | 0.521 | 9.91 | 0.844 | 1.03 | -- | -- | -- | -0.475 | 20.1 | -- | -- | -- | -- |
| 133.79 | 0.539 | 9.81 | 1.71 | -- | -1.9 | -- | -- | -0.157 | -- | 18.4 | 3003 | -- | -- |
| 127.35 | 0.528 | 9.91 | -- | 0.985 | -0.695 | -- | -- | -0.493 | 19.6 | 19.16 | 1662 | -- | -- |
| 181.77 | 0.63 | 9.88 | 0.835 | -- | -- | -- | -- | -0.487 | -- | -- | -- | -- | -- |
| 142.66 | 0.559 | 9.93 | -- | 1.02 | -- | -- | -- | -0.569 | 20.1 | -- | -- | -- | -- |
| 179.25 | 0.626 | 9.88 | -- | -- | -0.785 | -- | -- | -0.497 | -- | 19.16 | 1662 | -- | -- |
| 200.16 | 0.66 | 9.9 | -- | -- | -- | -- | -- | -0.58 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 70.00 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 3 | 70.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 10 | 70.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 24 | 70.70 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 35 | 70.99 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 62 | 71.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 64 | 71.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 65 | 71.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 98 | 72.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 100 | 72.35 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 101 | 72.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 106 | 72.40 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 108 | 72.41 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 113 | 72.46 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 129 | 72.61 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 140 | 72.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 143 | 72.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 146 | 72.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 149 | 72.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 155 | 72.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 169 | 72.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 182 | 72.78 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 195 | 72.84 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 215 | 72.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 232 | 72.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 242 | 72.95 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 263 | 73.02 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 268 | 73.05 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 272 | 73.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 283 | 73.11 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 291 | 73.15 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 295 | 73.18 | humidity | 50 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 306 | 73.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 326 | 73.33 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 331 | 73.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 350 | 73.40 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 363 | 73.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 367 | 73.47 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 368 | 73.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 382 | 73.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 383 | 73.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 390 | 73.50 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 400 | 73.54 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 403 | 73.55 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 522 | 73.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 526 | 73.73 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 529 | 73.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 535 | 73.76 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 541 | 73.77 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 553 | 73.81 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 581 | 73.88 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 693 | 74.06 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 702 | 74.07 | wind | 1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 704 | 74.07 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 728 | 74.13 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 743 | 74.15 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 781 | 74.21 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 805 | 74.24 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 853 | 74.28 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 876 | 74.31 | wind | 9 | 43200 | < th | dose dependent | sin | 2 | NA |
| 877 | 74.31 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 925 | 74.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 928 | 74.39 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 982 | 74.43 | wind | 3 | 43200 | > th | dose independent | sin | 1 | NA |