Os03g0126300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os03g0126300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.3 | 0.353 | 10 | 0.822 | 1.09 | 3.09 | -0.747 | 2.64 | -0.554 | 21.1 | 19.2 | 6145 | -- | -- |
| 57.98 | 0.355 | 9.98 | 0.791 | 1.11 | 1.88 | -0.937 | -- | -0.552 | 21 | 19.47 | 6008 | -- | -- |
| 57.79 | 0.354 | 10.1 | 0.857 | 1.09 | 3.9 | -- | 4.29 | -0.589 | 21.1 | 18.57 | 6043 | -- | -- |
| 59.18 | 0.358 | 9.96 | 0.829 | 1.1 | 1.96 | -- | -- | -0.539 | 21.1 | 19.5 | 6076 | -- | -- |
| 125.37 | 0.521 | 10 | 0.871 | -- | 4.21 | -- | 4.96 | -0.582 | -- | 18.5 | 5907 | -- | -- |
| 84.91 | 0.432 | 10 | -0.0202 | 1.09 | -- | -0.773 | -- | -0.813 | 21.1 | -- | -- | -- | -- |
| 87 | 0.437 | 10 | 0.0071 | 1.09 | -- | -- | -- | -0.812 | 21.1 | -- | -- | -- | -- |
| 126.94 | 0.525 | 9.93 | 0.803 | -- | 1.95 | -- | -- | -0.562 | -- | 19.33 | 5908 | -- | -- |
| 68.96 | 0.387 | 10 | -- | 1.09 | 1.38 | -- | -- | -0.726 | 21.1 | 18.11 | 6068 | -- | -- |
| 155.29 | 0.582 | 9.99 | 0.00936 | -- | -- | -- | -- | -0.819 | -- | -- | -- | -- | -- |
| 87 | 0.436 | 10 | -- | 1.09 | -- | -- | -- | -0.813 | 21.1 | -- | -- | -- | -- |
| 137.03 | 0.545 | 9.97 | -- | -- | 1.36 | -- | -- | -0.73 | -- | 18.25 | 5907 | -- | -- |
| 155.3 | 0.582 | 9.99 | -- | -- | -- | -- | -- | -0.82 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.45 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 2 | 52.76 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 3 | 53.06 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 5 | 54.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 6 | 54.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 8 | 54.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 9 | 54.40 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 13 | 54.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 15 | 54.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 16 | 54.66 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 23 | 54.86 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 26 | 54.87 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 40 | 54.94 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 19 |
| 47 | 55.05 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 76 | 55.29 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 81 | 55.31 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 98 | 55.42 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 111 | 55.48 | wind | 7.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 141 | 55.69 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 147 | 55.71 | wind | 7.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 159 | 55.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 167 | 55.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 168 | 55.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 189 | 55.96 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 5 |
| 194 | 55.99 | wind | 7.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 195 | 56.02 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 202 | 56.06 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 204 | 56.07 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 237 | 56.21 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 238 | 56.21 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 251 | 56.26 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 273 | 56.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 276 | 56.39 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 284 | 56.41 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 285 | 56.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 287 | 56.41 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 290 | 56.42 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 305 | 56.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 319 | 56.52 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 372 | 56.64 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 377 | 56.64 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 384 | 56.66 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 397 | 56.68 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 446 | 56.79 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 474 | 56.85 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 482 | 56.86 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 21 |
| 503 | 56.91 | wind | 1.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 509 | 56.92 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 561 | 57.01 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 600 | 57.07 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 619 | 57.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 683 | 57.27 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 685 | 57.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 688 | 57.30 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 712 | 57.35 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 743 | 57.41 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 782 | 57.46 | wind | 9.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 805 | 57.50 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 807 | 57.51 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 813 | 57.52 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 845 | 57.58 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 861 | 57.61 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 874 | 57.64 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 889 | 57.66 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 23 | 10 |
| 912 | 57.69 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 920 | 57.70 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 932 | 57.71 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 967 | 57.75 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 985 | 57.77 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 994 | 57.78 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 13 |