BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0124500 Os03g0124500|AK119960
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0124500 Conserved hypothetical protein 332 2e-91
Os10g0534400 Similar to E4 protein (Fragment) 81 7e-16
>Os03g0124500 Conserved hypothetical protein
Length = 247
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 177/247 (71%), Positives = 177/247 (71%)
Query: 1 MEVGSLQHLGDSFSYRWLKHAAQAPSFKRLVDDDVGGSSRYFIDMDPADLFSMRWTAPXX 60
MEVGSLQHLGDSFSYRWLKHAAQAPSFKRLVDDDVGGSSRYFIDMDPADLFSMRWTAP
Sbjct: 1 MEVGSLQHLGDSFSYRWLKHAAQAPSFKRLVDDDVGGSSRYFIDMDPADLFSMRWTAPGT 60
Query: 61 XXXXXXXXXXXXXXAASPIPLLVSASQIFHDGRLLPHELDDDGRFGAQEDGDAARVAHLL 120
AASPIPLLVSASQIFHDGRLLPHELDDDGRFGAQEDGDAARVAHLL
Sbjct: 61 DFDFDFDLPGGDDDAASPIPLLVSASQIFHDGRLLPHELDDDGRFGAQEDGDAARVAHLL 120
Query: 121 SEPRLSASSPLFHXXXXXXXXXXXXXXXXXXXXXXXXXPPLLAAGRRGGGSSPWKILLRY 180
SEPRLSASSPLFH PPLLAAGRRGGGSSPWKILLRY
Sbjct: 121 SEPRLSASSPLFHSAQSTPASLSSSSSARSGASKNASAPPLLAAGRRGGGSSPWKILLRY 180
Query: 181 LRFLMPLYRKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDWCHGIADTAVHDAILYCK 240
LRFLMPLYRKV IDWCHGIADTAVHDAILYCK
Sbjct: 181 LRFLMPLYRKVRALPPLRAPRTRVSPASPASARARASTSSIDWCHGIADTAVHDAILYCK 240
Query: 241 KSSGQNI 247
KSSGQNI
Sbjct: 241 KSSGQNI 247
>Os10g0534400 Similar to E4 protein (Fragment)
Length = 268
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 107/277 (38%), Gaps = 57/277 (20%)
Query: 11 DSFSYRWLKHAAQAP----SFKRLV---------DDDVG----GSSRYFIDMDPADLFSM 53
DSFS+ WL+ A+ SF+RLV D D+G GS FIDMDPA+LFSM
Sbjct: 9 DSFSHGWLRRKARPAAAAASFERLVGGEGDAVDVDGDLGHSFNGSVVSFIDMDPAELFSM 68
Query: 54 RWTAPXXXXXXXXXXXXXXXXAASPI--------PLLVSASQIFHDGR----LLPHELDD 101
RWT+ P PLLV A + DG LLP E
Sbjct: 69 RWTSLTAAAEEEEDHDDDDFDFGMPCVAGAQCSSPLLVGAGRALSDGHHHHLLLPCE--- 125
Query: 102 DGRFGAQEDGDAARVAHLLSEPRLSASSPLFHXXXXX-XXXXXXXXXXXXXXXXXXXXPP 160
G A++ R A P S SSPLFH P
Sbjct: 126 PGVVVARD-----RTASYADAPSPSPSSPLFHSALSTPASVITTASSRRAGAGSGKARAP 180
Query: 161 LLAAGRRGGGSSPWKILLRYLRFLMPLYRKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 220
LLA R ILLRYLRFL+PL RKV
Sbjct: 181 LLATRR---------ILLRYLRFLVPLCRKVRSLPLRVLSPRSAKGSLAAASSSASPARR 231
Query: 221 ID----------WCHGIADTAVHDAILYCKKSSGQNI 247
WCHG ADTAV DAILYCKKS GQ++
Sbjct: 232 STSSSYASAAEYWCHGNADTAVRDAILYCKKSIGQDM 268
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,087,538
Number of extensions: 231629
Number of successful extensions: 566
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)